Lsem003198.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lithophane semibrunnea
Gene Symbol
lrrfip2
Assembly
GCA_947363905.1
Location
OX376195.1:16872893-16883080[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.023 1.4e+02 2.0 0.8 43 91 53 102 35 107 0.82
2 3 2.6e-80 1.6e-76 257.9 22.1 1 297 122 413 122 416 0.89
3 3 4 2.5e+04 -5.7 17.0 1 49 412 459 412 490 0.73

Sequence Information

Coding Sequence
ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGTGATTCTGATGATGAGACGATCGTTGAACGCCTTGATGAAGCAAAGCCTGCTCACATACCTATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCGGCTACCAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCAAGAATGAATGGCCGTAAAAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCAGATTTGCGCAGAGATTCACACGGCGATCAGAATCCGTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAGAGGTTAGCAGCGCGGCGAGCGGCGCGGGCTGAAGCGCGAGAAATACGTATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATGCTGGCAAGACACCAGAGACGGTGGGTCGTCGTGGCGCTACGAGACTGACGGCGCTCAGCCCGGCCGTGCACTCACCCAGACGAAGCTCTGAAGACTCCGTCGATGATGGCTTCAGTATCAAGGATCTTAGGCATGAGTTGAAGGAGGTGGAGGAGAAGTTCCGTAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCAGCCCTGGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGTTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGTCTAAAGCGGGAACACGAGTCCGTCACTCGCGAGCTGAGCGCGGCGCGAGACGCGGTGCGAGCGCGAGACGCGGCGGCGGCGGGCGCCGGCTTCGCCTTCGTGGACGCGGCGGCGCTGGGCGCGGCGCCGGGCGCGGCCGAGCGCGCGGGCGAGGCGGTGGGCGCCGTGCCCGCGCTGGCGCTGGTGTCGCGCCCGGCGCAGCAGCTGCTGGACGACGCGGGAGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTCGAGTCGGAAGTGCGCAAGCTGAAGCTACAGCTGAATGAAGAGCGCGCCGCGCGACAGAACGGAGTCGCCAACCATCACGACCAAGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCGGTGTCAGAGGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCGAGGCTGCGCGCGCGACAGGACCATCAGGACGAGCACGAGGAACAGCTCAAGCAGGAGCGACGTAAACTGCAGAGAGAGGCTCGGGAAGCACTCAACCGAGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACTAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTGAAAGACCTGTGA
Protein Sequence
MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHIPINEAVKDDIQKSAATNGHSNGSVDEQSRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALGAAPGAAERAGEAVGAVPALALVSRPAQQLLDDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00622849; iTF_00831246; iTF_00745719; iTF_00042656; iTF_00282413; iTF_01152178; iTF_01192737; iTF_00622018; iTF_01073634; iTF_01425952; iTF_00000355; iTF_00001195; iTF_00186198; iTF_00185331; iTF_00327101; iTF_00111683; iTF_00794627; iTF_00345829; iTF_01062822; iTF_01532036; iTF_00711883; iTF_00301196; iTF_00445199; iTF_00302131; iTF_00446163; iTF_00928725; iTF_01439957; iTF_00685462; iTF_01061912; iTF_00447163; iTF_01533954; iTF_01533071; iTF_01084287; iTF_01063782; iTF_00449128; iTF_00785225; iTF_00783503; iTF_01285560; iTF_01029289; iTF_00973806; iTF_01180330; iTF_01179509; iTF_00038795; iTF_00771948; iTF_00177148; iTF_01361644; iTF_01064685; iTF_00037838; iTF_00726382; iTF_00850766; iTF_00172976; iTF_00364048; iTF_01538768; iTF_00171777; iTF_00951857; iTF_00043522; iTF_00036744; iTF_00810090; iTF_00809161; iTF_00375243; iTF_01094060; iTF_00851823; iTF_00274450; iTF_00273622; iTF_01028315; iTF_01119356; iTF_01118334; iTF_00906175; iTF_01173298; iTF_00120531; iTF_00122419; iTF_00823059; iTF_01030259; iTF_01027348; iTF_00869653; iTF_01363126; iTF_00147479; iTF_01332727; iTF_00821850; iTF_00374139; iTF_00907067; iTF_01526043; iTF_01441116; iTF_01247005; iTF_01264637; iTF_01338781; iTF_01340134; iTF_01342238; iTF_00049925; iTF_00017358; iTF_00450136; iTF_01260124; iTF_00425407; iTF_01527251; iTF_00383680; iTF_00924704; iTF_01093120;
90% Identity
iTF_00745719;
80% Identity
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