Alyc025898.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963680765.1
- Location
- OY796863.1:2893538-2908052[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.014 6.9e+02 0.7 0.9 44 91 54 103 36 108 0.73 2 3 2.6e-81 1.3e-76 259.3 23.5 1 297 123 412 123 414 0.90 3 3 1 4.9e+04 -6.6 15.6 1 49 411 458 409 485 0.67
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTAGCCACGCCTGACAATAGCGATGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGTGACTCCGATGATGAGACGATCGTTGAACGCCTTGATGAAGCTAAGCCTGCTCACATACCGATCAATGAAGCTGTGAAAGATGAGGTTCAGAAGAGTGCGGCTACTAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCAAAAATGAATGGCCGTAAAAATAGTGATGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAAAGGTTAGCGGCGCGGCGAGCGGCGCGGGCTGAAGCGCGAGAAATACGCATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATTCCGGAAAGACACCAGAGGCGGTGGGTCGTCGCGGCGCTACGAGACTGACGGCGCTCAGCCCGGCCGTACACTCACCGAGACGAAGCTCTGAAGACTCTATCGATGATGGCTTCAGCATCAAGGATCTTAGGCATGAGTTGAAGGAGGTGGAGGAAAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAATGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTATGCGCAGCTGCAGCGTGAACACAGAGAAAAGTGCTCATCATTCGAACGTCTAAAGCGAGAACACGAGTCGGTAACTCGCGAGCTGAGTGCGGCACGAGACGCGGTGCGAGCGCGagacgcggcggcggcgggcgcgggctTCGCCTTCGTGGACGCGGCGGCGCTGGACGCGGCCGGCCGGGACGCGGCGGGCGCCGCCGTCGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTGGAGTCGGAAGTACGCAAGCTGAAACTTCAGCTGAATGAAGAGCGCGCCGCGAGACAGAACGGAGTCGCCAATCATCACGACCAAGAGTACGAGAATGAACTGGAGACAGTCCGCAAGGCGGTGTCGGAGGCGAAGGGCCGCGCGGCGCGCGCCGAGGCCGACGCCGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTTGACAAACTCAAGAACGCGAAGTCTGCACTCCTGAAAGATCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHIPINEAVKDEVQKSAATNGHSNGSVDEQSKMNGRKNSDEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSGKTPEAVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAAGRDAAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEADAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -