Lnic007628.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963855955.1
- Location
- OY979666.1:22155147-22168859[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.085 1.8e+03 -0.9 0.3 45 91 55 102 39 106 0.74 2 3 1.7e-81 3.7e-77 260.8 26.8 1 297 122 411 122 413 0.91 3 3 2 4.3e+04 -7.2 15.3 1 48 410 456 410 484 0.64
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGTGGGGACGCCTTCACTGACGGAGATTTTTGTGATTCCGATGACGAGACGATCGTCGAACGCCTTGATGAAGCTAAGCCTCCTCACATACCGATCAATGAAGCTGTAAAAGATGATATCCAGAAGAGTGCTGCTACTAATGGTGACTCTAATGGTAGTGTAGATGATCAGCCCAGAATGAATGGTCGTAAAAATAGCGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCAGATTTGCGCCGAGATTCACACGGTGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAACAGAATCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCAGCGCGGGCTGAAGCGCGAGAAATACGCATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCATACGATATGTATGCTGGCAAGACACCAGAGACAGTGGGTCGTCGAGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGACCTTAGGCATGAGTTGAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATCCTAAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGGGAACACAGGGAAAAATGCTCATCGTTCGAGCGTCTAAAGCGGGAGCACGAGTCCGTAACTCGCGAGCTGAGCGCGGCACGAGACGCCGTGCGAGCGCGAGACGCGGCTGCCGCGAGCGCGGGCTTCGCCTTCGTGGACGCCGCGGCGCTGGACGCGGCCGCGCGGGAGTCGGCGGGCGCGGCCGTGGGAGCCGTGCCCGCGCTGGCGCTGGTGACGCAGCAGGCGCACCAGCTGCTCAACGATGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTATCCTCGAAGCAGGCGCTGGAGTCAGAAGTACGCAAGTTGAAACTACAGCTGAATGAAGAACGTGCTGCCAGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGAGACGGTCCGCAAGGCGGTGTCGGACGCCAAGGGCCGCGCGGCGCGCGCCGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTCGAGGCGCAGCTGGCGAGGCTGCGCGCGCGCCAGGAGCACCAGGACGGCCACGAGGAGCAGCTCAAGCAGGAGCGGCGCAAGCTGCAGCGAGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFCDSDDETIVERLDEAKPPHIPINEAVKDDIQKSAATNGDSNGSVDDQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAASAGFAFVDAAALDAAARESAGAAVGAVPALALVTQQAHQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDGHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -