Cpyr016376.1
Basic Information
- Insect
- Cosmia pyralina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_946251865.1
- Location
- CAMIUE010000555.1:464774-479404[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.036 8.7e+02 0.4 1.5 43 92 53 103 30 108 0.78 2 3 5.2e-81 1.2e-76 259.2 24.8 1 297 122 411 122 413 0.91 3 3 1.8 4.3e+04 -5.2 17.2 1 49 410 457 410 484 0.72
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTAGCCACGCCTGACAATAGTGATGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGTGATTCCGATGATGAGACGATCGTTGAACGCCATGATGAAGCTAAGCCTGCTCACATACCCATCAACGAAGCTGTAAAAGATGATATTGAGAAGAGTGCGGCTACGAATGGTCACTCTAATGGTAGTGTAGATGAGCAGGCCAGAATGAATGGCCGTAAAAATAGTGAAGCACATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACAGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAAAATCATGCGGAGCAGAGGTTAGCAgcgcggcgagcggcacgggcTGAGGCGCGAGAAATACGCATGCGCGAGCTGGAGAGGCAGCAGCGAGAACAGGAGGACCATGCCGACAAGGCCTATGATATGTACGCCGGCAAGACACCAGAGGCGGTGGGTCGTCGTGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAAGACCTAAGGCATGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAACTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGACTAAAGCGAGAACACGAGTCCGTAACTCGCGAGCTGAGCGCGGCGCGAGACGCGGTGCGAGCGCGAGACGCGGCGGCGGCAGGCGCGGGCTTCGCCTTCGTGGACGCCGCGGCGCTAGACGCGGCAGCGCGGGACACTGCGGGCGCCGCGGTCGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCTGGAGAGGGCACGCTTGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTGGAGTCGGAAGTACGCAAGCTAAAATTACAGTTGAATGAAGAGCGCGCTGCGAGACAGAACGGAGTCACCAATCATCATGACCAAGAGTACGAGAATGAACTGGAAACGGTCCGCAAGGCGGTGTCAGATGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTCCAGGCCGCGCATGTGGCGCGGCTCGAGGCGCAGCTGGCGCGTCTGCGGGCCCGCCAGGAGCACCAGGACGAGCACGAGGAACAGCTCAAGCAGGAACGACGTAAACTGCAGAGAGAGGCTCGGGAAGCACTCAACCGTGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAATCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERHDEAKPAHIPINEAVKDDIEKSAATNGHSNGSVDEQARMNGRKNSEAHSSDMENQSLVLSDLRRDSHSDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPEAVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARDTAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -