Anig008201.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947507805.1
- Location
- OX382298.1:23030540-23043710[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.023 6.4e+02 0.0 0.4 43 91 53 102 31 107 0.78 2 3 1.9e-81 5.3e-77 259.7 21.3 1 298 122 412 122 414 0.90 3 3 0.96 2.7e+04 -5.3 16.5 1 49 410 457 410 484 0.73
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACACCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGTGATTCCGATGACGAGACGATCGTCGAACGCCATGATGAAGTTAAGCCAGCTCACTTACCGATCAATGAAGCTGTAAAAGATGATATCCAGAAAAGTGCTGCTACTAATGGTCACTCTAATGGGAGTCTAGATGAGCAGCCCAGATTAAATGGCCGTAAAAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAAAATCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCAGCGCGGGCTGAAGCGCGAGAAATACGTATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCGTACGATATGTATGCCGGGAAAACACCAGAGACGGTGGGTCGGCGTGGTGCAACGAGGCTGACAGCGCTCAGCCCAGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGACCTAAGGCATGAGTTGAAAGAGGTGGAGGAGAAGTTCCGTAAGGCGATGATCCTAAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACATAAAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGGGAGCACGAGTCCGTGTCTCGCGAGCTGAGCGCGGCACGAGACGCGGTGCGAGCACGAGACGCGGCGGCGGCGGGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCCCTGGGTGCGGCCGCGCAGGGCACCGCGGGCGCGCCGGTCGGCGCTGTGCCGGCGCTGGCCTTGGTCACCCATCAGGCGCACCAGCTGCTCAATGATGCCGGGGAGGGCACGCTTGACGTCCGGTTGCAAAAGCTGTTAACCTCAAAACAGGCGCTGGAGTCTGAAGTACGCAAGTTGAAACTACAGCTGAATGAAGAACGCGCCGCGAGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGAAACGGTCCGCAAGGCGGTGTCGGACGCGAAGGGCCGGGCTGCGCGTGCCGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCGAGGCTGCGCGCGAGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCAAGCTGCAGCGGGAGGCTCGAGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCATCTCACGAAACGACTCGATAAACTCAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERHDEVKPAHLPINEAVKDDIQKSAATNGHSNGSLDEQPRLNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALGAAAQGTAGAPVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -