Acen028990.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_905333075.2
- Location
- HG995378.1:28375636-28391209[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 8.5e+02 0.8 1.1 43 91 53 102 35 107 0.78 2 3 1.7e-80 1.2e-76 259.7 24.4 1 298 122 412 122 414 0.91 3 3 9 6.5e+04 -7.7 12.9 1 142 410 455 410 485 0.43
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTAGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGAGATTCCGATGATGAGACGATCGTTGAACGCCTCGATGAAGCTAAGCCTTCTCACATACCGGTTAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCTGCTTCTAATGGTCACTCTAATGGAAGTTTAGATGAGCACTCAAGAATGAATGGCCGTAAAAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAAAGGTTAGCAGCGCGGCGGGCAGCGCGAGCGGAGGCGCGAGACATACGCATGCGAGAACTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCCTACGATATGTATGCCGGCAAGACACCAGAGACGGTGGGTCGTCGCGGAGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGATCTTAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCCCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAAGAGTATGCGCAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCTTTCGAGCGTCTAAAGCGGGAACACGAATCCGTAACTCGCGAGCTGAGCGCGGCACGAGACGCGGTACGGGCGCGAGACGCGGCGGCTGCGAGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCGCTGGACGCGGCGGCGCGGGGCTCTGCGGGCGCCGCCGTCGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAGTGACGCCGGGGAGGGCACGCTAGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTAGAGTCGGAGGTACGCAAGTTGAAACTACAGCTCAACGAAGAACGCGCCGCGAGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGACACGGTCCGCAAGGCGCTGTCGGAGGCCAAggcgcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCGGCGCAGGGCGCGCGCCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCACGACGCGCAGGACGCGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGGGAGGCTCGGGAAGCACTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTTAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPSHIPVNEAVKDDIQKSAASNGHSNGSLDEHSRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAASAGFAFVDAAALDAAARGSAGAAVGAVPALALVTHQAHQLLSDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELDTVRKALSEAKARAARAEAEAALQAAQGARLEAQLARLRARHDAQDAHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -