Achi013912.1
Basic Information
- Insect
- Antitype chi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947359405.1
- Location
- OX375812.1:20595450-20608472[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.025 6.2e+02 -0.1 0.4 43 91 53 102 36 107 0.78 2 3 7.2e-80 1.8e-75 254.5 24.2 1 297 122 411 122 413 0.89 3 3 1 2.5e+04 -7.8 15.1 1 44 410 453 410 483 0.64
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGATGCCTTCACTGACGGAGATTTTGGTGACTCCGATGACGAAACGATCGTCGAACGCCTTGATGAAGCTAAGCCGGCTCACATACCGATCAATGAAGCTGTCAAAGAAGATATTCAGAAGAGTGCTGCTACTAATGGCCACTCTAATGGGAGTGTAGATGAGCAGCCCAGATTGAATGGCCGTAAAAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAGAGGTTAGCAGCGCGACGCGCAGCGCGGGCTGAAGCGCGAGAAATACGAATGCGTGAGCTGGAGAGGCAGCAGCGAGAACAGGAGGACCATGCCGACAAGGCGTACGATATGTATGCCGGGAAAACACCAGAGACGGTGGGTCGTCGCGGCGCGACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAACGTCAAGGACCTTAGGCATGAGTTAAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAATGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAACTGCAGCGCGAATACAGAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGGGAACACGAGTCTGTATCTCGCGAGCTGAGCGCGGCACGAGATGCGGTGCGAGCACGAGACGCCGCGGCCGCGGGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCGTTGGATGTGGCGGCGCGGGACACTGCGGGGGCTGCGGTGGGGGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTGGAGTCAGAAGTACGCAAGTTGAAACTACAGCTGAATGAAGAACGTGCCGCCAGGCAGAACGGAGTCGCCAACCATCACGACCAGGAGTACGAGAATGAACTGGAGACAGTCCGCAAGGCGGTGTCGGAGGCCAAGGGCCGCGCGGCGCGCGCCGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCCCGCCTGCGCGCGCGCCAGGAGCACCAGGACGGCCACGAGGAGCAGCTCAAGCACGAGCGCCGCCGGCTGCAGCGGGAGGCACGGGAAGCACTTAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACAAAACGACTTGACAAACTTAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHIPINEAVKEDIQKSAATNGHSNGSVDEQPRLNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREYREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDVAARDTAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDGHEEQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -