Sver000549.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947562105.1
- Location
- OX387284.1:1756568-1766320[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 2.4e+03 -2.2 0.3 67 91 78 103 36 106 0.65 2 3 2e-78 4.4e-74 249.7 21.5 1 297 123 426 123 428 0.91 3 3 1 2.2e+04 -6.5 17.4 1 48 425 471 425 499 0.72
Sequence Information
- Coding Sequence
- ATGGGACATCGCTCTGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGTGATGCCTTCACTGATGGAGATTTTGGTGATTCAGATGACGAAACTATCATCGAACGCCATGATGAGTCTAAACCTTCACACATACCTATTAATGAAACTGTGAACGAGAACCTGCAGAAAAATGCAGCTACAAATGGTCACTCTAATGGTGACAATGTAGAAGAGCCGCCTAGACTGAATGGTCGTAAGAATAGTGAGAATCAATCAAGTGATGTTGAAAGCCAAAGTTTAGTATTATCGGATTTACGCAGAGACTCTCACGGCGACCAGAATCCTTCAATAGTTGGCATTCTCGGCGATCAACAGAACCATGCAGAGCAGCGGTTAGCAGCTCGTCGAGCAGCACGGGCCGAAGCGCGCGAGATACGCATGCGTGAGCTAGAGAGACAGCAGCGCGAACAGGAGGACCATGCAGATAAAGCATACGACATGTATGCTGGGAAGACGCCAGAGGCGGTTAGTCGTCGTGGCGGCACGCGGCTTGCGGCACTCAGCCCGGCCGTGCACTCGCCACGACGTAGCTCCGAAGACTCCATCGACGACGGCTTCAGCATCAAGGACCTCAGGCACGAGCTGAAAGAGGTCGAGGAAAAGTTCCGAAAGGCGATGATTCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTGGGATATCAGCTTGAACTGCTCAAGGATCGGATAGAGGAGCTGCATGAAGAGTACGCGCAGCTGCAGCGCGAGCATAAAGAGAAGTGCTCGTCATTCGAGCGCCTAAAGCGGGAGCACGAGTCCGTAACCCGCGAGCTGAGCGCGGCGCGGGACGCGGTGATGGCGCGGGACGCGGCCGCGCGAGCTGCCGGCTTCGCCTTCGTGGACGCGGCGGCGCTGGCGGGCGCGGGCGACGCGGGCGGCGCGGCGCGGGGCGAGGCGGGCGGGGCGGGCGCGCCGCGCGCAGGCGCAGCTGTGGGCGCTGTGCCTGCGCTGGCGCTGGTCAGCCACAACGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGGACGCTCGATGTGCGGTTGCAAAAGCTCCTGAGCTCGAAGCAAGGGTTAGAGTCGGAGGTGCGCAAACTGAAGCTACAGCTGAACGAGGAGCGCGCCGCCAGACAGAACGGCGTCACCAACCATCACGAACTAGAGTACGAGAATGAGCTGGAGACAGTCCGCAAGTCGGTGTCGGAGGCGAAGGGCCGCGCGGCTCGCGCCGAGGCCGAGGCCGCGCTGCAGGCCGCGCACGTCGCGCGCCTCGAGGCGCAGCTCGCGCGCCTCCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGGGAGGCTCGAGAGGCACTCAACCGGGTCGAAGAGTTGGAGACTGAGAACAGCCATCTCACCAAACGACTAGACAAGCTCAAGAATGCAAAATCCGCGCTTCTAAAAGACCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGDAFTDGDFGDSDDETIIERHDESKPSHIPINETVNENLQKNAATNGHSNGDNVEEPPRLNGRKNSENQSSDVESQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPEAVSRRGGTRLAALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVTRELSAARDAVMARDAAARAAGFAFVDAAALAGAGDAGGAARGEAGGAGAPRAGAAVGAVPALALVSHNAEQLLNDAGEGTLDVRLQKLLSSKQGLESEVRKLKLQLNEERAARQNGVTNHHELEYENELETVRKSVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_01538768;
- 80% Identity
- -