Pumb010944.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963891755.1
- Location
- OY982923.1:14296936-14305717[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 2.1e+03 -1.5 0.3 44 91 55 103 32 107 0.69 2 3 9.1e-77 6e-73 246.6 21.8 1 297 123 410 123 412 0.89 3 3 5 3.3e+04 -7.0 16.8 1 48 409 455 407 482 0.71
Sequence Information
- Coding Sequence
- ATGATGGGACAGCGCTCTGAAGTGGCCACGCCTGACAATAGTGACGAAGAGAGCGGAGATGCCTTCACTGACGGCGATTTTGGAGATTCTGATGATGAAACGGTCGTCGAACGCCATGAAGAGGCTAAGCCTGCACACCTGCCGATCAATGAAACGTTGAATAAGGATATTGAAAAGAATGCAGCTACCAATGGCCACTCTAATGGAAGCCTAGATGGCCAGCCCAGAATGAATGGTCGTAAGAATAGTGAAGCGCATTCAAGTGATGCAGAAAACCAAAGCTTAGTATTATCAGATTTGCGCAGAGATTCACACGGCGACCAGAATCCTTCAATAGTTGGCATTCTTGGCGATCAGCAGAACCATGCGGAACAGAGGTTAGCAGCGcgtcgggcggcgcgggcggaggCGCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAACAAGAGGACCATGCCGACAAAGCGTACGACATGTATGCGGGGAAGACACCAGAGACGGTGGGTCGTCGGCCACGGCTGGCGGCGCTCAGCCCGGCCGTGCACTCACCAAGACGCAGCTCCGAGGACTCCGCAGATGATGGCTTTAGCATCAAGGACCTTAGGCACGATTTGAAGGAAGTAGAGGAAAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAAGCGGCGCTCGGCTACCAGCTGGAGTTACTCAAGGACAGGATAGAGGAGCTGCATGAGGAATATGCGCAACTACAGCGAGAGCACAAGGAGAAGTGCTCGTCGTTCGAGCGCGTGCGGCGCGAGCACGAGTCGGGTGTGGCGGCGCTGCAGCTGGCGCGGGACGCCGTGCGCGCGCGggacgcggcggcggcggcggcgggcttCGCCTTCGTGGACGCCGCCGCGCTGGGCGCCGCCGAGCGACCCGCCGCCGCCCAGCCCGTCGGCGACGTGCCCGCGCTCGCGCTCGTCACGCACCAGGCGCACCAGCTGCTCGACGACGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAGAAGCTGCTGAGCTCGAAGCAGGCGCTAGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGAGGAGCGCGCCGCCCGGCAGAACGGAGTCACCAACCATCACGACCACGAGTATGAAAACGAGCTGGAGACGGTGCGCAAGTCGGTGGCGGAGGCGAAGGCTCGCGCGGCGCGGGCCGAGGCGGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGTCTGCGCGCGAGACAGGACCACCAGGACGAGCACGAGGACCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACTGAGAATAGCCACCTCACGAAACGACTAGACAAACTCAAGAACGCCAAGTCCGCGCTGCTGAAAGACCTGTGA
- Protein Sequence
- MMGQRSEVATPDNSDEESGDAFTDGDFGDSDDETVVERHEEAKPAHLPINETLNKDIEKNAATNGHSNGSLDGQPRMNGRKNSEAHSSDAENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRPRLAALSPAVHSPRRSSEDSADDGFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERVRREHESGVAALQLARDAVRARDAAAAAAGFAFVDAAALGAAERPAAAQPVGDVPALALVTHQAHQLLDDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDHEYENELETVRKSVAEAKARAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEDQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00785225; iTF_00783503;
- 80% Identity
- -