Sexi000258.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- lrrfip2
- Assembly
- GCA_011316535.1
- Location
- CM022056.1:14551681-14566969[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 7.5e+03 -3.8 0.1 254 279 79 105 64 107 0.46 2 3 1.3e-80 3.1e-76 256.9 22.9 1 297 125 416 125 418 0.90 3 3 1 2.3e+04 -6.3 15.6 1 47 415 460 415 489 0.68
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCGGAAGTGGCTACACCTGACAATACTGACGAGGAGAGCGGAGACGCATTCACTGATGGAGACTTTGGTGACTCCGAAGAAGAAACGATCATTGAACGCCATACTGATGCTAAGCCTGCGCATATGCCGATCAACGAAACGGTAAATGATGGTGTTCAGAACAATGCTGCTACTAATGGGCACACTAATGGTGGCGTCGATGAGCAGATCCGAATGAATGGTCGTAAAAACAGTGAAGCTCACTCAACTCACTCAAGTGACGTGGACAGCCAAAACTTAGTGTTATCAGATTTGCGCAGAGATTCTCACGGCGAACAAAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAACAAAGGTTGGCAGCGCGGCGAGCGGCTAGGGCGGAGGCGCGCGAGATCCGCATGCGTGAGCTGGAGCGCCAGCAGCGCGAACAGGAGGACCATGCAGACAAAGCGTATGATATGTACGCTGGGAAGACCCCAGAGTCAGTGGGTCGTCGCGGCGGTACTCGGCTGGCGTCCCTCAGTCCCGCCGTGCACTCGCCTCGCCGCAGCTCCGAGGACTCAATGGACGATGGGTTCAGCATCAAAGATCTTAGGCACGAGTTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGATACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGTTACAGCGCGAGCACAGAGAGAAATGCTCGTCGTTCGAGCGGCTGAAGCGGGAGCACGAGTCGGTGAGCCGCGAGCTGAGCGCGGCGCGCGACGCGGTGCGGGCGCGggacgcggcggcggcggccgcgGGCTTCGCCTTCGTGGACGCCGCCTCGCTGgacgcgcccgccgccgccgccgccgcgcccggcGCCTCCGTCGGCGCTGTGCCCGCCCTCGCACTGCTCACGCAGGCCGCGCATCAACTCCTCGACACCGCCGGGGAGGGCACGCTCGACGTACGGTTGCAGAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCCGAGGTACGCAAGCTCAAACTGCAGCTCAACGAGGAACGCGCCGCCAGGCAGAACGGAGTCTCCAACCATCACGACCAGGAGTACGAGAACGAACTGGAGACAGTCCGCAAGGCGGTGTCGGAGGCGAAGGGCCGCGCGGCGCGCGCCGAGGCCGAGGCCGCCTTGCAGGCCGCGCACGTGGCGCGCCTCGAGGCACAGCTGGCCCGTCTGCGCGCGCGCCAGGACCATCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGTCGCAAGCTGCAGCGAGAGGCTCGGGAAGCGCTAAACCGAGTTGAGGAGTTGGAGACTGAGAACAGCCACCTGACGAAGCGACTCGACAAACTCAAGAACGCGAAGTCTGCTCTCCTGAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNTDEESGDAFTDGDFGDSEEETIIERHTDAKPAHMPINETVNDGVQNNAATNGHTNGGVDEQIRMNGRKNSEAHSTHSSDVDSQNLVLSDLRRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPESVGRRGGTRLASLSPAVHSPRRSSEDSMDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAAAGFAFVDAASLDAPAAAAAAPGASVGAVPALALLTQAAHQLLDTAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVSNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_01363126;
- 80% Identity
- -