Xsex003880.1
Basic Information
- Insect
- Xestia sexstrigata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_941918865.2
- Location
- CALNXB020000048.1:2952229-2966450[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.018 4.8e+02 0.4 0.4 43 91 53 102 31 107 0.77 2 3 4e-82 1e-77 261.9 21.6 1 297 122 409 122 411 0.89 3 3 1 2.6e+04 -7.2 15.2 1 49 408 455 408 482 0.56
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCTACGCCTGATAATAGTGACGAGGAAAGCGGGGAAGCCTTCACTGATGGTGATTTTGGTGATTCCGATGAAGAAACGCTCGTCGAACGCTCTGATGAAGCGAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAATGCTGCTACTAATGGCCACACCAATGGTAATGTGGATGAGCAGCCCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGACCAGAATCCCTCAATCGTTGGTATTCTCGGCTGTCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGGCGAGCGGCGCGAGCTGAAGCGAGGGAGATACGAATGCGCGAGTTGGAGAGGCAGCAGCGCGAACAAGAGGACCATGCGGACAAGGCGTACGATATGTATGCGGGAAAGACGCCAGAGACGGTGGGCCGCCGCGGTACTACGAGGCTGACGACGCTCAGCCCGGCCGTGCACTCGCCCAGACGGAGCTCTGAAGACTCCATCGATGATGGATTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATACTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTATGCACAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCGTTCGAGCGTCTAAAGCGTGAACACGAGTCTGTGAGTCGCGAGCTGAGCGCGGCGCGGGACGCCGTGCGCGCGCGGGACGCCGCCGCCGCCGGCGCCGGGTTCGTCTTCGTGGACGCCGCCGCGCTGCACGTGACGCACGCGGCCGGGCCCGCGGTGGGGGCCGTGCCGGCGCTGGCGCTGGTGACGCACCAGGCGCAGCAGCTGCTCAACGACGCGGGAGAGGGCACGCTTGACGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCCGACGTGCGCAAACTGAAGCTGCAGCTCCACGAGGAGCGCGCCGCGCGACAGAACGGAGTCGCCAGCCATCATGATCACGAGCACGAGAACGAGCTGGAAACAGTCCGCAAGGCAGTGTCGGAGGCGAAGGGTCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGCATGTCGCGCGGCTGGAGGCGCAGCTGCAGCGACTGCGCGCGCGGCAGGACCACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTCAACCGGGTCGAAGAATTGGAGACTGAAAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCCAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGEAFTDGDFGDSDEETLVERSDEAKPAHIPINEAVKDDIQKNAATNGHTNGNVDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGCQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGTTRLTTLSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFVFVDAAALHVTHAAGPAVGAVPALALVTHQAQQLLNDAGEGTLDVRLQKLLSSKQALESDVRKLKLQLHEERAARQNGVASHHDHEHENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQDHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -