Mbra009254.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905163435.1
- Location
- LR990994.1:18203991-18218068[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.027 8.1e+02 -0.2 0.7 43 91 53 102 32 107 0.76 2 5 1.1e-68 3.3e-64 217.8 10.3 1 222 122 344 122 351 0.92 3 5 0.0034 1e+02 2.7 0.0 194 222 360 388 349 395 0.84 4 5 3.5e-17 1.1e-12 48.7 5.4 197 297 407 499 395 501 0.82 5 5 1 3e+04 -6.0 16.8 1 49 498 545 498 571 0.73
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGACGGAGATTTCGGTGATTCTGATGACGAAACGATCGTCGAACGCGCTGATGAAGCTAAGCCAGCACACATGCCGATCAATGAAGCTGTTAAAGATGATGTTCAGAAGAGTGCTGCTACTAATGGCCACTCTAACGGTAGTATAGATGAGCAGCCTAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGACTCACACGGCGACCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCCGAGGCGCGAGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGTGAGCAGGAGGATCATGCGGACAAGGCCTACGATATGTATGCCGGCAAGACACCAGAGACGGTGGGTCGTCGCGGCGCCACGAGGCTGACGGCGCTGAGCCCGGCCGTGCACTCCCCGAGGCGAAGCTCTGAAGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAAGTGGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAATGACAAGGCGGCGCTCGGATACCAGCTGGAGCTGCTGAAGGACAGGATAGAGGAGCTGCATGAAGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGCGAGCACGAGTCGGTATCTCGCGAGCTGAGCGCGGCGCGGGACGCAGTACTCGCGCGGGACGCCGCCGCAGCGGGCGCAGGCTTCGCCTTCGTGGACGCCGCGCAGCTGGAGCCCGGCGCGCGGGACACTGCGGGGGCTGCGGTGGGGGCGGTGCCCGCGCTGGCGCTGGTGACGCACCAGGCGCACCAACTGCTCAATGATGCGGGGGAGGGCACGCTCGGTATGTATGATACGCAGCTGGAGCCCGGCGCGCGGGACACTGCGGGGGCTGAGGTGGGGGCGGTGCCCGCGCTGGCGCTGGTGACGCACCAGGCGCACCAGCTGCTCAATGATTCGGGGGAGGGCACGCTCGGTATGTATGATACGCAGCTGGAGCCCGGCGCGCGGGACACTGTGGGGGCTGCGGTGGGGGCGGTGCCCGCGCTGGCGCTGGTGACGCACCAGGCGCACCAGCTGCTCAATGATGCGGGGGAGGGCACGCTCGACGTACGGTTGCAAAAGCTGCTGAGTTCGAAGCAGGCGCTAGAATCCGAAGTCCGCAAGCTGAAGCTACAACTGAACGAAGAACGCGCCGCAAGACAGAACGGAGTGACCAACCATCACGACCAAGAGTACGAGAATGAATTGGAGACAGTCCGCAAGGCGGTGTCGGAGGCGAAGGGGCGCGCCGCCCGGGCGGAGGCCGAGGCGGCGCTGCAGGCcgcgcacgtggcgcgcctCGAGGCGCAGCTGGCGAGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACGGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCCAAGTCTGCGCTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERADEAKPAHMPINEAVKDDVQKSAATNGHSNGSIDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVLARDAAAAGAGFAFVDAAQLEPGARDTAGAAVGAVPALALVTHQAHQLLNDAGEGTLGMYDTQLEPGARDTAGAEVGAVPALALVTHQAHQLLNDSGEGTLGMYDTQLEPGARDTVGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00425407;
- 80% Identity
- -