Cspo014997.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963564715.1
- Location
- OY751335.1:4451574-4470291[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 1.3e+04 -3.5 0.2 255 279 77 102 42 105 0.51 2 3 2.1e-78 9.8e-74 249.7 23.5 1 297 122 411 122 414 0.90 3 3 0.56 2.7e+04 -4.5 12.2 119 170 425 476 419 488 0.68
Sequence Information
- Coding Sequence
- ATGGGACATCGATCTGAAGTGGCCACACCGCACAATAGTGACGACGAGAGCGGAGACGCCTTTACAGATGCAGATTTTGGCGACTCCGATGATGAGACTATTATTGAACGAGACGATGCTGTAAAGTCTTCTCACATGCCTGTGAACGAGGCCAAGAACGAGGATATTCAGAAAATAAACGGAGCTACTAATGGTCACTCCAATGATGCAGCGGAGCAACCTAAGCTTAATGGCCGTAAGATTAGCGAAACTCACTCAAGCGACGCAGAGAACCAAAGTCTAGTATTAACAGATCTACGTAGAGACTCTCACGCCGAACAAAATCCTTCAATAGTTGGCATTCTTGGCGATCAGCAGAACCATGCAGAGCAGAGGTTAGCGGCGCGGCGCGCAGCCCGGGCCGAGGCGCGGGAAATACGCATGCGCGAGTTGGAGCGACAGCAGAGAGAACAGGAGGACCATGCTGATAAGGCATATGATATGTATGCAGAGACAGTAGGGCGGCGTGACCGTTCACGGCTGGCGGCGCTCAGCCCCGCGACTGTCGTGCACTCGCCGCGGCGCAGCTCCGAGGACTCCGCCGACGACACCTTCAGTATCAAGGATCTTAGGCACGAGTTAAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAACTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAATATGCACAGCTACAGCGGGAACACAGAGAGAAGTGCTCGTCATTTGAGCGATTGAAGCGCGAACATGAATCGGTGACGCGCGAGGTGTGCGCTGCGCGCGACGCCGTGCGGGCGCGGGACTGCGCCGCAGCCGCCGCCGGCTTCGCGTTCGTCGAGGCCGCCGCGCTAGACGCAGCCGACACGCCGCTCGGTGGCGTTGGCGTCGCCGTGGGTGCCGTTCCACCGCTCGCGCTAGTATCGCACCACGCCGAACAGCTGCTCAACGATGCCGGCGAGGGCACGCTAGACGTGCGGTTGCAAAACTTGCTAAGTTCGAAACAGTCACTGGAGTCAGAAGTGCGTAAGCTCAAGCTGCAGCTTAATGAGGAGCGCGCTGCGCGGCAGAACGGGGTCGCCAACCATCACGACCAGGAATACGAGAACGAGCTGGAGACGGTTCGCAAGACGGCGTCGGAGGCGAAGGCGCGTGCGGCACGTGCCGAGGCAGAGGCGGCGCTGCAAGGCGCGCACGTGGCTCGCCTCGAGGCGCAGCTGGCGCGGCTCAAGGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGCAAGCTGCAGCGCGAGGCTCGTGAGGCATTGAACCGAGTGGAAGAATTGGAGACAGAAAACAGCCACCTGACGAAACGACTGGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPHNSDDESGDAFTDADFGDSDDETIIERDDAVKSSHMPVNEAKNEDIQKINGATNGHSNDAAEQPKLNGRKISETHSSDAENQSLVLTDLRRDSHAEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRDRSRLAALSPATVVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTREVCAARDAVRARDCAAAAAGFAFVEAAALDAADTPLGGVGVAVGAVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKTASEAKARAARAEAEAALQGAHVARLEAQLARLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -