Njan008510.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963576755.1
- Location
- OY755058.1:2336591-2346933[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.25 3.6e+03 -2.4 0.2 50 89 60 101 45 106 0.50 2 3 1.4e-80 2e-76 257.8 21.7 1 297 123 412 123 415 0.90 3 3 2 2.9e+04 -5.9 12.6 1 48 411 457 411 475 0.70
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGAAAGCCTTTACTGACGGTGATTTTGGTGATTCCGATGACGAAATGCTCGTCGAGCGCCCTGATGAAGCGAAGCCTGCTCACATACCGATAAATGAAGCTGTAAAACATGATATTCACAAGAACGCTGCCACTAATGGCCACACCAATGGTAGTGCGGATGAGCAGACCAGAATGAATGGCCGAAAGAATAGTGAAGAAGCTCATTCGAGTGATATGGGTAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGACCAGAATCCCTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAACAGAGGTTAGCAGCGCGACGAGCGGCACGGGCTGAAGCGAGGGATATACGAATGCGGGAGCTAGAGAGACAGCAGCGCGAACAAGAGGACCATGCGGACAAGGCATACGATATGTATGCGGGAAAGACTCCAGAGACGGTGGGTCGCCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCTGCCGTGCACTCGCCCAGACGAAGCTCTGAAGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAAGCGGCGCTCGGCTACCAGCTAGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCGTTCGAGCGTCTAAAGCGGGAACACGAGTCCGTGTCCCGCGAGCTCAGCGCGGCGCGGGACGCCGTGCGTGCGCGGGACGCGGCCGCGGCCGGCGCCGGGTTCGCGTTCGTGGACGCCGCCGCGCTGGACGccggcgcgcgcggcgcggccGGGCCCGCCGTGGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGGAGCAGCTGCTCAACGATGCGGGAGAGGGCACGCTTGATGTGCGGTTGCAAAAGTTGCTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAACTGAAACTGCAGCTGAACGAGGAACGCGCCGCCCGGCAGAACGGAGTCGCCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCAGTGTCGGAAGCGAAGGgccgcgcggcgcgggcggAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGACTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCAGGGACACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCTCGGGAAGCACTCAACCGGGTCGAAGAGCTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGKAFTDGDFGDSDDEMLVERPDEAKPAHIPINEAVKHDIHKNAATNGHTNGSADEQTRMNGRKNSEEAHSSDMGNQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDAGARGAAGPAVGAVPALALVTHQAEQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQGHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -