Xrho015227.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963853795.1
- Location
- OY970767.1:18654165-18667068[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.016 6.2e+02 0.5 0.2 43 91 53 102 36 107 0.80 2 3 1.9e-80 7.3e-76 256.4 26.1 1 297 122 400 122 403 0.92 3 3 1 3.8e+04 -6.4 14.6 1 49 399 446 399 477 0.55
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGAAGCCTTCACTGACGGTGATTTTGGTGACTCCGATGACGAAACGCTCGTCGAACGCCCTGCTGAAGCGAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAATGCTGCTACTAATGGCCACACCAATGGTAGTGTGGATGAGCAGCCCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTTTCGGATTTGCGCCGAGATTCACACGGCGACCAGAATCCCTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCAGAGCAGAGGTTAGCAGCGCGACGAGCGGCCCGGGCTGAAGCGAGGGAGATACGAATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAAGAGGACCATGCGGACAAGGCGTACGATATGTATGCGGGAAAGACACCAGAGACGGTGGGCCGCCGCGGCGCTACGAGGCTGACGGCGCTCAGTCCCGCCGTGCACTCGCCCAGACGGAGCTCTGAAGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTAAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAACACAGAGAGAAATGCTCATCGTTCGAGCGTCTAAAGCGTGAGCACTCGTCCGTGAGCCGCGAGCTGAGCGCGGCGCGGGACGCCGTGCGCGCGCGGGACgcggccgccgccggcgccggctTCGCCTTCGTGGACGCCGCCGCCAGGGACGACGCCCTGCCGGCGCTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCAATGACGCCGGAGAGGGCACGCTTGACGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCTGAGGTGCGCAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCCGACAGAACGGAGTCACCAACCATCACGACCACGAGTACGAGAACGAGCTGGAAACAGTCCGCAAGGCGGTGTCGGAGGCGAAggggcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGGCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGGACCACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTCAACCGTGTCGAGGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGEAFTDGDFGDSDDETLVERPAEAKPAHIPINEAVKDDIQKNAATNGHTNGSVDEQPRMNGRKNSEAHSSDMENQSLVFSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHSSVSRELSAARDAVRARDAAAAGAGFAFVDAAARDDALPALALVTHQAQQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDHEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQDHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -