Mper012344.2
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947386135.1
- Location
- OX376649.1:20478664-20493536[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.041 5.1e+02 0.2 0.5 43 91 53 102 36 107 0.76 2 4 8e-69 9.9e-65 219.2 10.7 1 222 122 344 122 347 0.93 3 4 4.3e-17 5.3e-13 49.4 4.4 197 297 374 466 361 467 0.81 4 4 2 2.5e+04 -5.9 16.8 1 49 465 512 465 539 0.73
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCTGAAGTGGCCACACCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGACGGAGATTTCGGTGATTCTGATGACGAAACTATCGTCGAACGCCCTGATGAAGCTAAGCCTGCTCACATGCCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCTGCTACTAATGGCCATTCTAACAATGCTCTAGATGAGCAGCCCAGAATGAATGGCCGAAAGAACAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGGCGAGACTCACATGGAGACCAGAATCCTTCAATCGTTGGCATTCTAGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGGCGAGCGGCGCGGGCCGAGGCGCGAGAGATACGCATGCGTGAGCTGGAGAGACAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCTTACGATATGTATGCTGGGAAGACACCAGAGACGGTGGGTCGTCGCAGCGCCACGAGGCTGACGGCTCTGAGCCCGGCCGTGCACTCCCCGAGGCGAAGCTCTGAAGACTCCGTCGATGATGGCTTCAGCATCAAGGACCTTAGGCATGAGTTGAAGGAGGTGGAAGAAAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACAGGATAGAGGAGCTGCATGAAGAGTACGCGCAGCTGCAGCGCGAGCACAGGGAAAAATGCTCATCATTCGAGCGTCTAAAGCGCGAACACGAGTCGGTGTCCCGCGAGCTGAGCGCGGCGCGGGACGCCGTGCTAGCGCGGGACGCTGCGGCCGCGGGCGCCGGCTTCGCCTTCGTGGACGCCGCGCAGCTGCAGCCGGACGCCCGGGGCAGCGCCGGCGCCGCGGTGGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCACCAGGCGCACCAGCTGCTCAACGATGCGGGGGAGGGCACGCTCGGTATGTATCATACGTCTAGAGCGCGCTTCGCCTTCGTGGACGCCGCGCAGCTGCAGCCGGACGCCCGGGGCAGCGCCGGCGCCGCGGTGGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCACCAGGCGCACCAGCTGCTCAACGATGCGGGGGAGGGCACGCTCGACGTACGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTAGAATCCGAGGTCCGCAAGCTGAAGCTACAGCTGAACGAAGAACGAGCCGCGAGACAGAACGGAGTCACCAACCACCACGACCAGGAATACGAGAATGAACTGGAGACAGTGCGCAAGGCGGTGTCGGAGGCGAAGGGCCGCGCCGCCCGCGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGGCTGGAGGCGCAGCTGGCCAGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACGGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCCAAGTCTGCGCTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERPDEAKPAHMPINEAVKDDIQKSAATNGHSNNALDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRSATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVLARDAAAAGAGFAFVDAAQLQPDARGSAGAAVGAVPALALVTHQAHQLLNDAGEGTLGMYHTSRARFAFVDAAQLQPDARGSAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -