Mlal011233.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949319445.1
- Location
- OX439353.1:2512353-2532798[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.058 1.1e+03 -0.3 0.3 44 91 54 102 36 107 0.74 2 3 9.1e-81 1.7e-76 258.4 23.8 1 297 122 411 122 413 0.90 3 3 2 3.7e+04 -5.6 16.7 1 49 410 457 410 483 0.73
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCAGAGGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGACGGAGATTTTGGTGATTCCGATGACGAAACCATCGTGGAACGCCTTGATGAAGCTAAGCCTGCTCACATGCCGATCAATGAAGCTGTAAAAGATGATATCCAGAAGAGTGCTGCTACTAATGGTCACTCTAATGGTGGTTTAGATGAGCAGCCCAGAATGAATGGCCGTAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTGTTATCGGATTTGCGCCGAGATTCACACGGCGACCAGAATCCTTCAATCGTTGGCATTCTCGGCGACCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCTGAGGCGCGGGAGATACGAATGCGTGAGCTGGAGAGACAGCAGCGCGAACAAGAGGATCATGCGGACAAGGCATACGATATGTATGCCGGCAAGACTCCAGAGACGGTGGGTCGTCGTGGAGCCACGAGGCTGACAGCACTCAGCCCGGCCGTGCACTCTCCGAGGCGGAGCTCCGAGGACTCCGTCGATGATGGCTTCAGCATGAAGGACCTTAGGCACGAGTTGAAGGAGGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGACTAAAGCGCGAACATGAGTCCGTAACCCGCGAGCTGAGTGCGGCGCGGGACGCCGTGCGCGCGCgggacgccgccgccgccggcgccggCTTCGCCTTCGTGGACGCGGCGGCGCTGGAGCCGGCCGCGCGGGGGGCCGCCGGGGCCGGCGTGGGCGCCGTGCCCGCGCTGGCGCTGGTGACGCAGCAGGCGCAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTATTGAGCTCGAAGCAGGCGCTGGAGTCAGAAGTGCGTAAGCTGAAGCTGCAGCTTAACGAGGAGCGCGCCGCCAGGCAGAACGGAGTAGCCAACCATCACGACCAGGAGTATGAGAATGAACTAGAAACAGTCCGCAAGGCAGTATCGGAGGCGAAGGgtcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTGGCGCGCCTGCGTGCTCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGAGGCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACAGAGAATAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCCAAGTCTGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHMPINEAVKDDIQKSAATNGHSNGGLDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALEPAARGAAGAGVGAVPALALVTQQAQQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -