Lorn004308.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_948473465.1
- Location
- OX419619.1:16353001-16364139[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.015 1.7e+02 1.6 0.5 43 91 53 102 34 107 0.81 2 3 1.2e-80 1.3e-76 258.1 24.1 1 297 122 413 122 415 0.89 3 3 2 2.2e+04 -5.6 16.8 1 49 412 459 412 486 0.73
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGATGAGGAGAGCGGGGACGCCTTCACTGACGGTGATTTTGGTGATTCCGATGATGAGACGATCGTTCAACGCCTTGATGAAGCTAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCGGCTACTAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCAAGAATTAATGGCCGTAAAAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCAGATTTGCGCCGAGATTCTCATGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAGAGGTTAGCAGCGCGGCGAGCGGCGCGGGCGGAGGCGCGAGAAATACGCATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATGCTGGCAAGACACCAGAGACGGTGGGTCGTCGCGGCGCTACGAGACTGACGGCGCTCAGCCCGGCCGCGCACTCACCGAGACGAAGCTCTGAAGACTCCGTCGATGATGGTTTCAGCATCAAGGATCTTAGGCACGAATTGAAGGAGGTGGAGGAAAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAATGACAAGGCGGCGCTCGGTTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCGTCATTCGAGCGTCTAAAGCGGGAACACGAGTCCGTAACTCGCGAGCTGAGCGCGGCACGAGACGCGGTGCGAGCGCGAGACGCGGCGGCGGCGGGCGCGGGCTTCGCCTTTGTGGACGCGGCGGCGCTGGGCGCGGCCGAGCGCGCGGGCGCCGGCGCGGGCGCCGCCGTGGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCAGCAGGCGCAGCAGCTGCTGGACGACGCGGGCGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTAACCTCAAAGCAGGCGCTAGAGTCGGAAGTGCGCAAGCTGAAGCTACAGCTGAACGAAGAGCGCGCCGCGCGACAGAACGGAGTCGCCAACCATCACGACCAAGAGTACGAGAATGAACTGGAAACAGTCCGCAAGTCGGTGTCAGAGGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCCCGGCTGCGCGCGCGCCAGGACCATCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGTAAACTGCAGAGAGAGGCTCGGGAAGCACTCAACCGAGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTGAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVQRLDEAKPAHIPINEAVKDDIQKSAATNGHSNGSVDEQSRINGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAAHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALGAAERAGAGAGAAVGAVPALALVTQQAQQLLDDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKSVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -