Pfla016143.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949987655.1
- Location
- OX465179.1:24166011-24180526[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.076 3.7e+03 -1.7 0.2 57 91 68 103 45 107 0.64 2 3 3.3e-80 1.6e-75 255.6 23.5 1 297 123 412 123 415 0.91 3 3 1 4.9e+04 -7.4 15.6 1 48 411 457 411 485 0.66
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAAAGCGGGGATGCCTTCACTGACGGAGATTTTGGTGACTCCGATGACGAAACGATCGTCGAACGCCTTGACGAAGTTAAGCCCGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCTGCTACTAATGGCCACTCTAATGGGAGTGTAGTAGATGAGCAGCCCAGATTGAATGGCCGTAAAAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGTTTAGGATTATCGGATTTGCGCAGAGATTCACACGGTGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAAAATCATGCGGAGCAGAGGTTAGCAGCGCGACGCGCAGCGCGGGCTGAAGCGCGGGAAATACGAATGCGTGAGCTGGAGAGGCAGCAGCGAGAACAGGAGGACCATGCCGACAAGGCGTACGATATGTATGCCGGGAAAACACCAGAGACGGTGGGTCGTCGCGGCGCGACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCTGTTGATGATGGCTTCAGCATTAAGGACCTTAGGCATGAGTTAAAAGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATCGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCTTTTGAGCGTCTAAAGCGGGAACACGAGTCCGTATCTCGCGAGCTGAGCGCGGCACGCGATGCGGTGCGAGCGCGAgacgcggcggcggcgggcgcgggCTTCGCCTTCGTGGACGCGGCGGCGTTGGacgcggcggcgcgcggcgctgcCGGGGCTGCGGTCGGCGCCGTGCCTGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAACCTGTTAACCTCGAAGCAGGCGCTAGAGTCAGAAGTACGCAAGTTGAAACTACAGCTGAATGAAGAACGCGCCGCCAGACAGAACGGAGTCACCAACCATCACGATCAGGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCGGTGTCGGAGGCCAAGGGCCGCGCGGCGCGCGCCGAGGCCGAGGCCGCGCTGCAGGCGGCGCAGGTGGCGCGCCTGGAGGCGCAGCTGGCGCGGCTGCGCGCGCGGCAGCAGCACCAGGACGGCCACGAGGACCAGCTCAAGCAGGAGCGCAGGAAGCTGCAGCGCGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTTGACAAACTTAAGAACGCAAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEVKPAHIPINEAVKDDIQKSAATNGHSNGSVVDEQPRLNGRKNSEAHSSDMENQSLGLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARGAAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQNLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAQVARLEAQLARLRARQQHQDGHEDQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -