Basic Information

Insect: Caradrina clavipalpis
Gene Symbol: lrrfip2
Assembly: GCA_932526535.1
Location: OW052093.1:1687051-1697856[-]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.022 4.5e+02 0.1 0.4 44 91 54 102 36 107 0.75

2 3 1.7e-80 3.5e-76 256.6 25.7 1 297 122 411 122 413 0.90

3 3 0.99 2.1e+04 -5.3 16.3 1 49 410 457 408 477 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.022	4.5e+02	0.1	0.4	44	91	54	102	36	107	0.75
2	3	1.7e-80	3.5e-76	256.6	25.7	1	297	122	411	122	413	0.90
3	3	0.99	2.1e+04	-5.3	16.3	1	49	410	457	408	477	0.75

Sequence Information

Coding Sequence: ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTTACAGACGGAGATTTCGGTGATTCTGATGACGAAACCATTGTCGAACGCCTTGATGAGGCTAAGCCTGCACACATGCCGATCAATGAAGCTGTCAAAGATGATATTCAGAAGAGTGCAGCTACTAATGGTCACGCTAATGGTAGTCTAGATGAGCAGCCTAGAATGAATGGCCGTAAAAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAGTTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATAGTTGGCATTCTCGGCGATCAGCAGAACCATGCAGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAGCAGGAGGACCATGCCGATAAGGCGTACGATATGTACGCCGGCAAGACACCAGAGACGGTGAGCCGTCGCGGCGGCACCCGGCTGGCGGCGCTGAGCCCGGCCGTGCACTCACCCAGGCGGAGCTCCGAGGACTCCGTCGATGATGGGTTCAGTATCAAGGACCTTAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTATGCGCAACTACAGCGCGAACACAAAGAAAAATGCTCATCATTCGAGCGTTTAAAGCGCGAGCACGAGTCCGTGTCCCGCGAGCTGAGCGCGGCGCGGGACGCGGTGCGGGCGCGGGACGCGGCGGCCGAGGGCGCGGGCTTCGCCTTCGTGGACGCGGCCGCGCTCGACGCGGAGGCGCGCGCTACTGCGGGCGCGGGCGTGGGCGCCGTGCCCGCGCTCGCGCTCGTCTCGCACCAGGCGCACCAGCTGCTCACCGAGGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAATGAAGAACGCGCCGCGCGACAGAACGGCGTCACCAACCATCACGACCAGGAGTACGAGAATGAATTGGAAACAGTCCGCAAGGCAGTATCGGAGGCGAAGGGGCGCGCCGCCCGCGCCGAGGCGGAGGCCGCGCTGCAGGCCGCGCACGTCGCCCGCCTCGAGGCACAGCTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTGAAGAACGCGAAGTCTGCTCTCCTGAAAGACCTGTGA
Protein Sequence: MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHMPINEAVKDDIQKSAATNGHANGSLDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVSRRGGTRLAALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVSRELSAARDAVRARDAAAEGAGFAFVDAAALDAEARATAGAGVGAVPALALVSHQAHQLLTEAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00907905;
90% Identity: iTF_00745719;
80% Identity: -