Ndro020263.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147325.1
- Location
- LR990161.1:1261805-1275718[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.034 7.2e+02 -0.5 0.4 61 92 77 109 45 114 0.58 2 3 2.4e-75 5.1e-71 239.6 22.0 1 298 128 428 128 429 0.91 3 3 1 2.1e+04 -6.9 17.0 1 48 426 472 426 504 0.71
Sequence Information
- Coding Sequence
- ATGGTGTATCGATCCGAGATGGCCACGCCTGACAATAGCGATGAGGAGAGCGGCGACGCCTTCACCGACGGAGATTTCGGTGATTCTGATGATGAAACCATAGTGGAGCGTAGTGATGAAGCCAAACCTTCGCTTATTCCCCTCAACGAAACCGTCAACGAAGAAATGCAGAAAACAAATGCATCAACTAACGGTCATTCCCTCGGTAATGGTTTAGACGAGAAGCAGAATGAGCTGCCTAAACTCAATGGACGAAAAAATAGTGAGAATCAATCAAGTGACGTAGAAAACCAGAGCTTTGTGATATCGGATCTCCGGAGAGACTCTCACAGCGAACAAAATCCATCCATAGTCGGGATTCTCGGCGATCAACAAAACCACGCAGAGCAGCGGCTCGCGGCGCGGCGCGCGGCTCGAGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGAACCATGCCGACAAGGCGTACGACATGTATGCAGATACGGTGGGGCGCCGCGGCGGCACGCGACTCGCGGCGCTGGGCCAGGCCCCCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGACGACACATTCAGCGTCAAGGAACTTAGGCACGAGCTGAAGGAGCTCGAAGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGCACGTGCAGCTGCAGCGAGAACACCGAGAGAAATGCTCGTCGTACGAGCGTTTAAAACGCGAGCACGAGTCCGTGACGCGCGAGCTGAGCGCGGCGCGCGACGCGGTACGCGCGCGGGACGCGGCCGCGGCGGCGGCGGGCTTCGCGTTCGTGGACGCCGCCGAGCTGGCCGCCGCGCCCCCCGCCCCCGCCGCGCCTGACGCCGACCCCGCCCCCGCCCCCGCCCCGCCCGCCTCGCCACACGTCGGCGTCGTGCCGCCGCTCGCGCTCGTCTCGCACTCCGCGGAGAAACTACTCAACGACGCCGGCGAGGGCACGCTAGACGTCCGGTTGCAGAAGCTACTGAGCTCGAAGCAAGCGCTGGAGTCGGAAGTGCGGAAGCTGAAATTGCAGCTGAACGAGGAGCGCGCCGCGCGACAGAACGGCGTCGCGAACCACCACGACGACGAGTACGAGAACGAACTGGAGGCGGCGCGCAAGTCCCTGGGTGAGGCGAAGGCGCGGGCGGCGCGAGCGGAGGCCGAGGCAGCGCTGCAGGCCGCGCAGCTGGCGCGGCTGGAAGCGCAGCTGGCCAGGCTGCGCGCCAGGCAGGACCACCAGGACGAGCACGAGGACCAGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGCGAGGCTCGAGAGGCCCTCAACCGCGTGGAAGAGTTGGAAACGGAGAACAGCCACCTGACCAAACGCCTCGACAAGCTCAAGAACGCCAAGTCGGCGCTCCTGAAGGACCTGTGA
- Protein Sequence
- MVYRSEMATPDNSDEESGDAFTDGDFGDSDDETIVERSDEAKPSLIPLNETVNEEMQKTNASTNGHSLGNGLDEKQNELPKLNGRKNSENQSSDVENQSFVISDLRRDSHSEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQENHADKAYDMYADTVGRRGGTRLAALGQAPVHSPRRSSEDSDDTFSVKELRHELKELEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHVQLQREHREKCSSYERLKREHESVTRELSAARDAVRARDAAAAAAGFAFVDAAELAAAPPAPAAPDADPAPAPAPPASPHVGVVPPLALVSHSAEKLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDDEYENELEAARKSLGEAKARAARAEAEAALQAAQLARLEAQLARLRARQDHQDEHEDQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00622018;
- 80% Identity
- -