Htar016057.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_945859575.2
- Location
- OX243840.1:25324135-25344164[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.02 7.5e+02 0.2 0.9 233 281 57 104 52 106 0.65 2 3 5.9e-80 2.2e-75 254.8 29.8 1 295 122 401 122 405 0.90 3 3 0.42 1.6e+04 -4.1 14.1 1 48 402 448 402 466 0.73
Sequence Information
- Coding Sequence
- ATGGGGCGTCGTTCTGAAGTAGCCACTCCTCACAATAGTGACGACGAAAGCGGAGATGCTTTTACAGATGGTGATTTCGGCGATTCGGATGATGAAACTGTCGTTGAAAGAAGTGACAGTCTGACGACAGCCCATATTCCTATAAACGAAGCGAAGAACGAGGATATCCAGAAAATGAACGGAACAACCAATGGTATTTCAAATGACTTAGAGGAGCAAACCAGGCAAAATGGGCATAAGATTAGCGAAGCTCACTCAAGTGATGCAGAGAACCAAAGTTTAACGTTCTTAGATCTACGCAGGGATTCTCACGGTGATCAAAACCCCTCAATAGTTGGAATTTTGGGCGGTCAGCAGAACCATGCAGAGCAGAGGTTGGCAGCTCGTCGCGCGGCACGAGCCGAGGCGCGGGAGATACGCATGCGAGAATTGGAGCGGCAACAAAGAGAACAGGAAGACCATGCTGACAAAGCATACGATATGTATGCCGAGACGGTGGGACGAAGAGATCGCACACGACTGGCGGCTCTCAGCCCCGCCAGCTCAGTGCACTCGCCGCGCCGGAGCTCTGAGGACTCCGTCGATGATGCCTTTAGCATCAAGGACTTAAGGCACGAGTTAAAAGAAGTGGAGGAGAAATTCCGCAAGGCCATGATTCTAAATGCGCAGCTGGATAATGACAAGGCGGCACTCGGCTACCAGTTAGAATTGCTCAAGGATAGGATAGAGGAGCTTCACGAGGAATATGCACAGTTACAGCGCGAGCACAGAGAGAAGTGCTCTTCGTTCGAGCGGCTGAAGCGCGAGCACGAGGCCGTGGTGCGCGAGCTGGCGGCGGCGCGCGACGCCGTGCGCGCGCGCGACGCGGCGGCCGCGGCCGCGGGCTTCGCCTTCGTGGAGGCGGCGGGCGCCGAGCGCGCCGAGCAGCACGGTGCCGTGCCGCCGCTCGCGCTCGTGTCGCACAGCGCCGAGCAACTGCTCAACGACGCCGGGGAGGGCACGCTAGACGTGCGGTTGCAAAAGTTGTTAAGTTCGAAACAATCACTGGAGTCCGAAGTACGCAAGCTAAAGTTACAATTGAACGACGAACGCGCCGCCAGGCAGAATGGCGTCACCAACCATCACGACCAGGAGTACGAGAATGAATTGGAAACGGTCCGCAAGTCAGCGTCGGAGGCCAAGGGGCGCGCGGCCCGCGCCGAGGCGGAGGCGGCGCTGCACGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTGGCGCGGCTCAAGGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCTCGCGAGGCATTGAACCGAGTAGAAGAATTGGAGACTGAGAACAGCCATCTGACGAAACGACTGGACAAATTGAAGAACGCCAAGTCTGCACTTCTCAAGGATCTGTGA
- Protein Sequence
- MGRRSEVATPHNSDDESGDAFTDGDFGDSDDETVVERSDSLTTAHIPINEAKNEDIQKMNGTTNGISNDLEEQTRQNGHKISEAHSSDAENQSLTFLDLRRDSHGDQNPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDAFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHEAVVRELAAARDAVRARDAAAAAAGFAFVEAAGAERAEQHGAVPPLALVSHSAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNDERAARQNGVTNHHDQEYENELETVRKSASEAKGRAARAEAEAALHAAHVARLEAQLARLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -