Slit001677.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002706865.1
- Location
- NC:171132-181555[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.064 1e+03 -1.4 0.6 45 91 55 102 30 107 0.69 2 3 9.8e-81 1.6e-76 257.4 22.1 1 297 122 408 122 410 0.91 3 3 1 1.6e+04 -5.9 16.3 1 48 407 453 407 480 0.73
Sequence Information
- Coding Sequence
- ATGGGGCAGCGCTCGGAAGTAGCTACACCTGACAATAGTGACGAGGAGAGCGGAGACGCTTTCACTGATGGAGACTTTGGTGACTCCGAAGAAGAAACTATCGTAGAACGCCATACTGACGCTAAGCCTGCGCACATGCCAATCAACGAAACAGTGAATGACGATGTTCAGAACACTGCTGCTACTAATGGGCACTCTAATGGTGGCGTCGATGAGCAGCTCCGAATGAATGGTCGTAAAAACAGTGAAGCTCACTCAAGTGATGTGGACAGCCAAAGCTTAGTGTTATCAGATTTGCGCAGAGACTCTCACGGCGAACAAAATCCTTCGATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAACAAAGGTTGGCGGCGCGGCGTGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAACAAGAGGACCATGCAGACAAAGCGTATGATATGTATGCCGGGAAGACACCAGAGTCAGTGGGTCGTCGCGGCGGCACGCGGCTGGCGTCCCTCAGCCCGGCCGTGCACTCGCCTCGCCGCAGCTCCGAGGACTCCATGGATGACGGGTTCAGCGTCAAAGATCTTAGACACGAGTTGAAGGAAGTGGAGGAGAAGTTCCGTAAGGCGATGATCCTGAATGCGCAGCTGGACAACGACAAGGCGGCGCTCGGGTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAATATGCACAGTTACAGCGAGAGCACAGAGAGAAATGCTCATCATTCGAGCGTTTGAAGCGGGAGCACGAGTCAGTGAGTCGCGAGCTGGGCGCGGCGCGCGACGCGGTCCGGGCGCGGGACGCGGCGGCCGCGGCCGCGGGCTTCGCCTTCGTGGACGCCGCCTCGCTGGACGCGGGCGCGCCCGGGGCCGCCGTCGGCGCCGTGCCCGCGCTGGCGCTGCTCACGCAGGCCGCGCATCAACTCCTCGACACCGCCGGGGAGGGCACGCTCGACGTACGGTTGCAGAAGTTATTGAGTTCGAAGCAGGCGCTGGAGTCCGAGGTCCGCAAGCTGAAGCTGCAGCTCAACGAGGAGCGTGCCGCCAGGCAGAACGGAGTCACCAACCATCACGACCAGGAATACGAGAATGAACTGGAGACCGTGCGCAAGGCGGTGTCGGAGGCGAAGGGCCGCGCGGCGCGCGCCGAGGCGGAGGCCGCGCTGCAGGCCGCGCACGTCGCGCGCCTCGAGGCGCAGCTGGCCCGTCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAACAACTCAAGCACGAGCGGCGCCGGCTGCAGCGAGAGGCTCGGGAGGCGCTCAACCGAGTTGAGGAGTTGGAGACTGAGAACAGCCACCTGACGAAGCGACTCGACAAGCTCAAGAACGCGAAGTCTGCCCTGCTGAAAGATCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSEEETIVERHTDAKPAHMPINETVNDDVQNTAATNGHSNGGVDEQLRMNGRKNSEAHSSDVDSQSLVLSDLRRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPESVGRRGGTRLASLSPAVHSPRRSSEDSMDDGFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELGAARDAVRARDAAAAAAGFAFVDAASLDAGAPGAAVGAVPALALLTQAAHQLLDTAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_01361644;
- 80% Identity
- -