Tcit023581.3
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963921375.1
- Location
- OY992792.1:3705427-3719177[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.046 7.8e+02 0.6 0.4 44 91 54 102 35 107 0.77 2 4 7.6e-69 1.3e-64 219.9 11.1 1 222 122 344 122 346 0.94 3 4 4.9e-17 8.3e-13 49.8 3.3 198 298 358 450 349 452 0.84 4 4 3 5.1e+04 -6.2 14.7 1 48 448 494 448 522 0.61
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGATGGAGATTTTGGTGATTCCGACGATGAGACGATCGTTGAACGCTTTGCTGAAGCAAAGCCTGCTCACATACCGGTCAATGAAGCTGTACAAGATGATATTCAGAAGAGTGCGGCTACTAATGGTCACTCTAATGGCAGTGTAGATGAGCAGTCAAAAATTAATGGCCGTAAAAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAACTTAGTATTATCGGATTTACGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTGGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAAAGGTTAGCAGCGCGACGAGCAGCGCGGGCGGAGGCGCGAGAGATACGCATGCGAGAACTGGAGCGGCAGCAGCGGGAACAGGAGGACCATGCCGACAAGGCCTACGACATGTATGCCGGCAAGACACCAGAGACGGTGGGTCGTCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGCGCACTCACCAAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGATCTTAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCCCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTACACGAAGAGTATGCGCAGTTGCAGCGTGAACACAGAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGGGAACATGAGTCCGTAACTCGCGAGCTGAGCGCGGCACGAGACGCGGTGCGAGCGCGAGACGCGGCGGCTGCGGGCGCGGGCTTCGCCTTCGTGGATGCCGCGGCGCTGGACGCGGAGGCGCGGGGCTCCGCGGGCGTCGCCGTGGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCACCAGGCGCACCAGCTGCTGTGTGACGCCGGGGAGGGCACGCTGGGGCACGCTGGGTACGTAACACTACACTCTACACGCGGCGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCACCAGGCGCACCAGCTGCTGTGTGACGCCGGGGAGGGCACGCTGGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTAGAGTCGGAGGTACGCAAGTTGAAACTACAACTGAACGAAGAACGCGCCGCGAGACAGAACGGAGTCACCAACCATCACGACGAAGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCGGTGTCAGACGCGAAGGGCCGCGCGGCGCGGGCCGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGTCTGGAGGCGCAGCTGGCGCGACTGCGGGCCCGCCACGAGCTGCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAACGGCGGAAACTGCAGAGAGAGGCTCGGGAAGCACTCAACCGAGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCAAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERFAEAKPAHIPVNEAVQDDIQKSAATNGHSNGSVDEQSKINGRKNSEAHSSDMENQNLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAAHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAEARGSAGVAVGAVPALALVTHQAHQLLCDAGEGTLGHAGYVTLHSTRGGAVPALALVTHQAHQLLCDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDEEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARHELQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -