Xare017269.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- lrrfip2
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000677.1:113535-125592[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.062 7.7e+02 -0.4 2.1 45 91 55 103 26 108 0.56 2 3 9.4e-83 1.2e-78 265.0 19.5 1 297 123 413 123 415 0.93 3 3 0.62 7.7e+03 -3.7 16.4 1 48 412 458 412 477 0.75
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCTGAATTGGCCACGCCTGATAATAGCGATGAGGAGAGCGGCGATGCCTTCACTGACGGAGATTTTGATGACTCCGATGATGAAAAGATGGTTGAACGCCATGATGAGGCTAAGCCGTCACAAATACCTATAAATGAGACTGTGAATGCAGATATAAAGAAAAATGCAGCTACTAATGGTCACTCTAATAGTAGTAGTGTAGAAGAGCATCCCAGAATGAATGGTCGTAAGGACAGTGAGAATCAATCGAGTGATATAGAAAACCAAAGCTTAGTATTATCAGATTTGCGCAGAGATTCACACGGTGATCAAAATCCTTCAATAGTTGGCATTCTTGGCGATCAGCAAAACCATGCGGAACAGAGATTAGCAGCACGTCGAGCGGCGCGTGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGACAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCGTACGATATGTATGCGGGCAAGACACCAGAGGCGGTGGTTCGCCGCGGCGGCACGCGATTGGCGGCGCTTAGTCCCGCCGGAGTTCATTCGCCACGACGCAGTTCTGAAGACTCCATCGATGATGGCTTCAGTATCAAGGACCTTAGGCACGAGTTGAAGGAAGTTGAGGAGAAGTTCCGGAAGGCGATGATCTTGAACGCTCAGCTGGACAACGACAAGGCCGCGCTAGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAAGAGCTACATGAGGAGTACGCGCAGTTGCAGCGTGAACATAGAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGGGAACACGAGTCGGTAACCCGCGAACTGTCGGCGGCTCGTGACGCAGTGCGCGCGCGGGACGCCGCAGCGTCGGCCGCCGGGTTCGCGTTCGTGGACGCGGCCACGCTGGACGCGGGCGCGGGCGGCCCGGCCGGCGGTGCCGTGGGCGCCGTGCCCTCGCTCGCGCTCGTCAGCCACGACGCCGAGCAGCTGCTCAATGACGCCGGGGAAGGCACGCTCGATGTGCGGTTGCAAAAACTTCTGAGCTCGAAGCAGGGATTAGAATCCGAAGTGCGCAAACTGAAGTTACAGTTGAACGAGGAGCGCGCCGCGCGGCAGAACGGAGTCACCAACCACCACGAACAGGAGTACGAGAACGAACTGGAGACGGTCCGCAAGTCAGTGTCGGAGGCGAAGGGGCGCGCGGCGCGGGCCGAGGCCGAGGCGGCGCTACAGGCGGCGCATGTGGCGCGCCTAGAGGCGCAGCTAGCACGCATGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCTCGAGAAGCACTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTAACAAAACGATTAGACAAGCTCAAGAACGCCAAGTCTGCACTCCTAAAAGACCTGTGA
- Protein Sequence
- MGQRSELATPDNSDEESGDAFTDGDFDDSDDEKMVERHDEAKPSQIPINETVNADIKKNAATNGHSNSSSVEEHPRMNGRKDSENQSSDIENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPEAVVRRGGTRLAALSPAGVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAASAAGFAFVDAATLDAGAGGPAGGAVGAVPSLALVSHDAEQLLNDAGEGTLDVRLQKLLSSKQGLESEVRKLKLQLNEERAARQNGVTNHHEQEYENELETVRKSVSEAKGRAARAEAEAALQAAHVARLEAQLARMRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00049925; iTF_01342238;
- 80% Identity
- -