Atri006825.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000021.1:4326990-4336824[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.044 8.7e+02 -0.9 0.9 42 91 54 103 33 109 0.59 2 3 6.8e-83 1.3e-78 264.4 14.7 1 297 123 416 123 419 0.92 3 3 1 2e+04 -7.2 16.6 1 48 415 461 415 488 0.70
Sequence Information
- Coding Sequence
- ATGGGACATCGTTCAGAGCTGGCCACGCCTGACAATAGTGACGAAGAGAGCGGCGATGCGTTTACTGACGCAGATTTTGGTGATTCCGATGATGACACAATCGTAGAACGTCACGACACAGCTAAATCTTCTCACATACCCATAAATGAAACTATGAACGAAGAGGTCCAGAAAAGTGCTGCTACCAATGGTCATTCCAATGGTAATATGGTAGAAGAACAACCGAGACTAAATGGTCGAAAGAATAGTGAGAATCAAACAAGTGATGTTGAAAATCAAAACTTCGTTTTATCGGATTTGCGCAGAGATTCACACGGCGATCAGAATTCTTCGATAGTTGGCATTCTCGGAGATCAACAGAACCATGCAGAGCAACGGTTAGCAGCACGTCGCGCAGCGCGTGCTGAAGCGAGAGAAATACGCATGCGTGAGTTAGAGAGGCAGCAGCGAGAACAGGAGGACCATGCCGACAAAGCGTACGACATGTATTCTGGGAAGACACCAGAGACGGTGGGCCGTCGCGGGGGCACGCGACTGGCCGCGCTCAGCCCGGCCGGCGTGCACTCGCCAAGGCGCAGCTCTGAGGACTCTGCTGATGACACTTTTAGCATCAAAGACCTCAGGCACGACTTGAAGGAGGTTGAGGAGAAGTTTCGGAAGGCGATGATATTAAATGCGCAGCTGGATAATGACAAGGCGGCGCTGGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTTCACGAAGAGTACGTGCAACTACAGCGCGAGCACAAAGAGAAGTGCTCCTCGTTCGAGCGTCTAAAGCGCGAGCACGAGACCGTGAGCCGCGAGCTGAGCGCGGCGCGGGCGGCCGTGCGCGCGCGGGACGCCGCCGCCGCGCAGGCCGGCTTCGCCTTCGTGGACGCGCCGCCCGACTGCCCCGCCGAGCCCGCGCCCGCGCCGCCCGCGCCGCCCGCGCAGCCCGCGCAGCCCGCGCTGGCGCTCGTCAGCCACGGCGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTAGACGTGCGGTTGCAAAAGCTGTTGAGTTCGAAGCAGTCGCTGGAGTCAGAAGTGCGGAAGCTGAAGCTGCAGCTGAACGAAGAGCGCGCGGCCCGGCAGAACGGAGTCACCAACCACCACGAACACGAGTACGAGAACGAACTGGAAACGGCGCGAAAGGCAGTGTCAGAGGCGAAGGCCCGCGCGGCGCGGGGCGAGGCCGAGGCCGCGCTGCAGGCCGCGCTGGTGGCGCGCCTCGAGGCGCAGCTGGCGCGCCTCCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTGGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAGCGACTAGACAAGCTCAAGAACGCCAAGTCTGCACTCCTGAAGGACCTGTGA
- Protein Sequence
- MGHRSELATPDNSDEESGDAFTDADFGDSDDDTIVERHDTAKSSHIPINETMNEEVQKSAATNGHSNGNMVEEQPRLNGRKNSENQTSDVENQNFVLSDLRRDSHGDQNSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSGKTPETVGRRGGTRLAALSPAGVHSPRRSSEDSADDTFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYVQLQREHKEKCSSFERLKREHETVSRELSAARAAVRARDAAAAQAGFAFVDAPPDCPAEPAPAPPAPPAQPAQPALALVSHGAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVTNHHEHEYENELETARKAVSEAKARAARGEAEAALQAALVARLEAQLARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00000355; iTF_00185331; iTF_00186198; iTF_00327101;
- 80% Identity
- -