Ckad000766.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947462355.1
- Location
- OX381678.1:1589777-1599376[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.044 4e+02 0.1 0.3 45 91 55 102 37 107 0.75 2 3 4.4e-80 4e-76 256.2 25.5 1 297 122 411 122 413 0.90 3 3 2 1.8e+04 -5.6 16.3 1 48 410 456 410 482 0.74
Sequence Information
- Coding Sequence
- ATGGGACAGCGTTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTCGGTGATTCCGATGACGAAACCATCGTCGAACGCCTTGATGAGGCTAAGCCTGGTCACATGCCAGTCAATGAAGCTGTTAAAGATGATATTCAGAAGAGTGCAGCCACTAATGGTCACGCTAATGGTAGTCTAGATGAGCAGCCTAGAATGAATGGTCGTAAAAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAGTTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCAGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCGGAGGCTCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCGGATAAGGCGTACGACATGTACGCCGGCAAGACACCAGAAACGGTGAGTCGCCGCGGCGGTACCCGGCTGGCGGCGCTAAGCCCGGCCGTGCACTCACCGAGACGGAGCTCCGAAGACTCCGTCGATGACGGCTTCAGTATCAAGGACCTTAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGAAAGGCGATGATCCTGAATGCGCAGCTGGACAATGATAAGGCGGCGCTCGGCTACCAGCTGGAGCTTCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTACAGCGCGAACACAAAGAAAAATGCTCATCATTCGAGCGTTTAAAGCGCGAGCACGAGTCCGTGTCTCGCGAGCTGAGCGCGGCACGAGACGCGGTCCGAGCGCGAGACGCAGCGGCGGAAGGCGCGGGCTTCGCGTTCGTGGACGCGGCGGCGCTGGACGCGGAGGCGCGCGCCACGGCGGGCGCCGGCGTGGGCGCCGTGCCCGCGCTCGCGCTCGTGTCGCACCAGGCGCACCAGCTGCTCAGCGAGGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGACTTCGAAGCAGGCGCTAGAGTCGGAGGTGCGCAAGTTAAAGCTGCAGCTGAACGAAGAACGCGCCGCGCGACAGAACGGAGTCACTAACCACCACGACCACGAGTACGAGAACGAATTGGAAACAGTCCGCAAGGCGGTGTCGGAGGCGAAGGGCCGCGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCTGCTCTCCTGAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPGHMPVNEAVKDDIQKSAATNGHANGSLDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVSRRGGTRLAALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVSRELSAARDAVRARDAAAEGAGFAFVDAAALDAEARATAGAGVGAVPALALVSHQAHQLLSEAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDHEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -