Ppra018136.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951640165.1
- Location
- OX621241.1:35887112-35907573[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.31 2.3e+04 -3.7 0.2 66 88 77 99 39 104 0.50 2 3 3e-79 2.3e-74 252.4 25.8 1 297 122 405 122 408 0.88 3 3 1 7.5e+04 -9.6 15.0 18 154 421 461 402 481 0.40
Sequence Information
- Coding Sequence
- ATGGGACATCGTTCGGAGCTGGCCACACCTGACAACAGTGACGAGGAGAGCGGTGATGCCTTCACTGATGGTGACTTCGGGGATTCGGATAATGAGACCATCGTTGAAAGAACCGACGATGCAAAATCTTCGGCCATACCTGTTAATGAAACCGTGAACCAAGAGTTGCCAAAAAGTTCCACTACAAATGGCCATGCTAATGGTGACATCTCAAAGGACCAGCTGAAACTGAATGGCCGTAAAAATAGTGAGAACCTTAGCGATATTGAGAACCAAAGCTTAACTCTATCGGAATTGCGTCGAGATTCGCACGGAGACCAGAATCCTTCAATTGTCGGAATTCTTGGAGACCAACAGAACCACGCGGAACAGCGGCTTGCAGCGAGACGCGCAGCGCGAGCCGAGGCGCGGGAAATACGCATGAGAGAGCTCGAGAGGCAGCAGCGGGAGCAGGAGGACCATGCTGACAAGGCTTATGACATGTATGCCGAGACGGTGGGTCGCCGCGGTGGCACGCGGCTGGCGGCACTCAGCCCCGGCGTACATTCGCCGCGACGCAGTTCTGAGGACTCCGTGGACGACGGGTTCAGCATCAAAGACCTGAGGCATGAACTAAAAGAAGTAGAGGAGAAGTTCCGCAAGGCTATGATTCTGAATGCGCAGTTGGACAACGATAAGGCGGCGCTCGGCTACCAGCTAGAACTGCTCAAAGACAGGATAGAGGAGTTACACGAAGAATACGCGCAGTTGCAGCGCGAACACCGAGAAAAATGCTCATCATTCGAGCGATTAAAACGGGAGCACGAGTCAGTGTGTCGCGAGCTCAGCGCAGCTCGCGACGCCGTGCGAGCGCGCGACGCGGCCGCCAACGCCGCGGGCTTCGCCTTCGTGGAGGCCGCGTCGCTCGAAACATGCACTAGCAGTGGCCAGGCGGTGGGCCAGGTGCCCTCCTTGGCACTCGTCTCACATTCGGCGGAACAGTTGTTGAATGACGTCGGAGAGGGCACGTTAGACGTCCGGTTGCAGAAGCTACTAAGTTCAAAACAGTCTTTAGAATCAGAAGTCCGCAAACTGAAACTACAGCTGAACGAAGAGCGGGCGGCGAGACAAAACGGCGTCGCGAATCATCACGACCAGGAGTATGAGAATGAGTTGGAGACAGTACGCAAGTCCGTGGCCGAGGCCAAGGGGCGGGCGGCGCGGGCCGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCTGCACGACGAGAGCGAGGAGGCGCTCAAGCAGGAGAAGCGCCGGCTGCAGAGAGAGGCCCGAGAGGCTCTCAACCGAGTCGAAGAACTGGAGACTGAAAATAGCCACCTGACGAAACGACTAGACAAACTCAAGAATGCTAAATCTACACTTTTGAAGGAGCTGTGA
- Protein Sequence
- MGHRSELATPDNSDEESGDAFTDGDFGDSDNETIVERTDDAKSSAIPVNETVNQELPKSSTTNGHANGDISKDQLKLNGRKNSENLSDIENQSLTLSELRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPGVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVCRELSAARDAVRARDAAANAAGFAFVEAASLETCTSSGQAVGQVPSLALVSHSAEQLLNDVGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKSVAEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDLHDESEEALKQEKRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -