Mpal012197.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_961205895.1
- Location
- OY540833.1:23172052-23195719[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.014 5.1e+02 0.7 0.6 44 91 54 102 36 107 0.78 2 3 6e-81 2.1e-76 258.1 21.5 1 295 122 409 122 411 0.89 3 3 1 3.6e+04 -5.6 16.8 1 49 410 457 408 483 0.74
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCAGAGGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGATGGAGATTTTGGTGATTCCGATGACGAAACAATAGTGGAACGCCTTGATGAAGCTAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATCCAGAAGAAAGCTGCTACTAATGGTCACTCTAATGGTAGTATAGATGAGCAGACCAGAATGAATGGCCGTAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTGTTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGGGACCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCTGAGGCGCGAGAGATACGCATGCGCGAACTTGAGAGACAGCAGCGCGAACAGGAGGACCATGCGGATAAGGCATACGATATGTATGCCGGAAAGACTCCAGAGACGGTGGGTCGTCGCGGGGCCACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCTCCGAGGCGAAGCTCGGAGGACTCTGTCGATGATGGCTTCAGCATGAAGGATCTAAGGCACGAGTTGAAGGAGGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTGAATGCGCAGCTGGACAACGACAAGGCAGCGCTCGGCTACCAGCTGGAGTTGCTCAAGGACAGGATAGAGGAACTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAATGTTCATCATTCGAGCGACTAAAGCGTGAGCACGAGTCCGTGAGCCGCGAGCTGGGCGCCGCGCGGGACGCCGTGCGCGCGCGCGACGCCGCCGCGCAGGGCGCCGGCTTCGCCTTCGTGGACGCCGCCGCGCTCGAGCCGCCCGCGAGGGGGGCCGCGGGCGCCGCCGTGGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCAGCAGGCGCACCAGCTGCTCAATGATGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTGAGTTCGAAGCAGGCGCTAGAGTCGGAAGTCCGCAAGTTGAAGCTGCAGCTCAACGAAGAACGCGCCGCGCGGCAGAACGGAGTCGCCAACCATCACGACCAAGAGTACGAGAATGAACTAGAAACAGTCCGCAAGGCAGTATCGGAGGCAAAGGGCCGCGCGGCGCGGGCGGAGGCTGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCGCGCCTGCGCGCCCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGAGGCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAATTGGAGACAGAGAATAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCTGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHIPINEAVKDDIQKKAATNGHSNGSIDEQTRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELGAARDAVRARDAAAQGAGFAFVDAAALEPPARGAAGAAVGAVPALALVTQQAHQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -