Cinc006007.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_941860345.1
- Location
- OW796095.1:11521485-11534636[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-82 1.1e-77 261.6 13.3 1 297 123 417 123 420 0.90 2 2 1 2.2e+04 -6.5 13.1 1 47 416 461 416 490 0.57
Sequence Information
- Coding Sequence
- ATGGGGCAGCGGACTGAAGTGGCCACGCCGGACAACAGCGACGAGGAGAGCGGCGATGCCTTCACTGACGCTGACTTCGGTGATTCTGATGAGGACACTATTGTGGAAAGACACGATGCAGACAAATCTTCACACATACCTGTTAACGAAACAGTCAACAAAGAAGTACAGAAAACCGCATCTACGAATGGGCATAGTAATGGTGATGTGGGAGAGGAACCGCCTAGACTGAATGGTCGCAAGATTAGTGGCAGTCACTCGAGTGATACTGAAAACCAAAGCTTAGTTTTAACGGATTTGCGCAGAGATTCTCACAGCGAACAGAATCCATCAATAGTTGGCATTCTCGGCGATCAGCAGAACCATGCTGAGCAGAGACTAGCGGCACGGCGAGCAGCTCGTGCCGAAGCCCGGGAGATCCGCATGCGGGAGCTCGAGCGCCAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCATACGACATGTATGCGGGGAAAACACCAGACCCGGTGGGTCGTCGCGGCGGCACGCGGCTGGCGGCGCTCAGCCCGGCCGGCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCCGCGGACGACACCTTCAGCATCAAGGACCTCAGGCATGATTTAAAGGAGGTGGAGGAGAAGTTCCGGAAGGCGATGATACTGAACGCTCAGCTGGACAACGATAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAAGATAGGATAGAGGAGCTTCACGAAGAGTATGCGCAACTACAGCGCGAGCATAAAGAGAAGTGCTCATCATTCGAGCGTATAAAGCGCGAGCACGAGTCTGTGTCGCGCGAGCTGCAGGCGGCGCGCGGCGCGGTGCGGGCGCGGGACGCCGCCGCCGCCGCCGCGGGCTTCGCCTTCGTGGACGCGCCCCCCGAGACCCCCGCCACCCCCGCAGCCCCCGCCACCCCCGGAGCCCCGCCCGCCGCCCCCGAGCCCACGCTGGCGCTTGTCAGCCACGGCGCGGAGCAGCTGCTTAATGACGCCGGGGAGGGCACGCTCGACGTACGGTTGCAGAAGTTGTTGAGTTCGAAACAGTCTCTAGAATCGGAAGTGCGTAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCGGCGAGACAGAACGGAGTGTCCAACCATCATGAACACGAGTACGAGAACGAACTGGAGTCAGCTCGCAAGGCAGTATCGGAGGCGAAGGCTCGTGCGGCGCGCGGTGAGGCAGAGGCAGCGCTGCAGGGCGCGCTGGTGGCGCGGCTGGAGGCGCAGCTGGCCCGTCTGCGCGCCAGGCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAGCACGAGCGACGCCGCCTGCAGCGCGAGGCTCGGGAAGCGCTCAATCGGGTGGAAGAATTGGAAACTGAGAACAGCCACCTCACGAAGCGACTAGACAAGCTTAAGAACGCCAAGTCAGCACTACTGAAGGACCTGTGA
- Protein Sequence
- MGQRTEVATPDNSDEESGDAFTDADFGDSDEDTIVERHDADKSSHIPVNETVNKEVQKTASTNGHSNGDVGEEPPRLNGRKISGSHSSDTENQSLVLTDLRRDSHSEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPDPVGRRGGTRLAALSPAGVHSPRRSSEDSADDTFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERIKREHESVSRELQAARGAVRARDAAAAAAGFAFVDAPPETPATPAAPATPGAPPAAPEPTLALVSHGAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVSNHHEHEYENELESARKAVSEAKARAARGEAEAALQGALVARLEAQLARLRARQDHQDEHEEQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00001195;
- 80% Identity
- -