Ctra016977.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905163495.1
- Location
- LR991028.1:3429340-3450672[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.04 1e+03 0.2 0.3 46 91 56 102 38 107 0.73 2 3 2.1e-80 5.6e-76 257.2 25.6 1 297 122 411 122 413 0.91 3 3 2 5.3e+04 -5.5 17.5 1 49 410 457 410 484 0.72
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTAGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGTGATTCCGATGATGAGACGATCGTTGAACGCCTTGATGAAGCCAAGCCTGCTCACATACCGATCAACGAAGCTGTAAAAGATGATATTGAGAAGATTGCGGCTACGAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCCAGAATTAATGGCCGTAAAAATAGTGAAGCACATTCAAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAGAGGTTAGCAGCGCGGCGAGCGGCGCGTGCTGAAGCGCGAGAAATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCCTACGATATGTACGCCGGCAAGACACCAGAGGCGGTGGGTCGTCGAGGCGCCACGAGGTTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGTCTTCAGCATCAAGGATCTTAGGCATGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGTCTAAAGCGAGAACACGAGTCCGTAACTCGTGAGCTGAGCGCGGCACGAGACGCGGTGCGAGCGCGAgacgcggcggcggcgggcgcgGGCTTCGCCTTCGTGGACGCCGCGGCACTAGATGCGTCGGCGCGGGACACTGCGGGCGCCGCGGTGGGTGCCGTGCCCTCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCTGGAGAGGGCACgcttgACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTGGAGTCGGAAGTACGCAAGCTGAAACTACAGCTGAACGAAGAGCGCGCTGCGAGACAGAATGGAGTCACCAACCATCATGATCAAGAGTACGAGAATGAACTGGAAACGGTCCGCAAGGCGGTGTCAGATGCGAAGgggcgcgcggcgcgggcggAGGCCGAGGCGGCGCTCCAGGCCGCGCACGTGGCGCGGCTCGAGGCTCAGCTGGCACGTCTGCGGGCCCGCCAGGAGCACCAGGACGAGCACGAGGAGCAACTCAAGCAGGAACGACGTAAACTGCAGAGAGAGGCTCGGGAAGCACTCAACCGTGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAHIPINEAVKDDIEKIAATNGHSNGSVDEQSRINGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPEAVGRRGATRLTALSPAVHSPRRSSEDSVDDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDASARDTAGAAVGAVPSLALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -