Alot005098.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947364205.1
- Location
- OX376228.1:19665260-19678794[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0055 1.4e+02 2.1 0.9 39 91 49 102 35 107 0.81 2 3 1.7e-81 4.2e-77 259.9 24.1 1 298 122 412 122 414 0.91 3 3 1 2.5e+04 -7.1 14.2 1 48 410 456 410 484 0.64
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGACGGAGATTTTGGTGACTCCGATGATGAGACGATCGTTGAACGCCTTGATGAAGCTAAGCCTGCTGACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCGGCTACTAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCAAGAATGAATGGCCGTAAAAATAGTGAAGCTCATTCAAATGATATGGAAAACCAAAGTTTAGTATTATCGGATTTGCGCCGAGATTCACATGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAAAGGTTAGCAGCGCGGCGAGCGGCGCGGGCTGAAGCGCGAGACATACGCATGCGCGAGCTGGAGAGACAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATTCCGGAAAGACACCAGAGGCGGTGGGTCGTCGCGGCGCTACGAGACTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTCGATGATGGcttcagcatcaaggaccttaggCATGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCTTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTATGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGTCTAAAGCGAGAACACGAATCCGTAACTCGCGAGCTGAGCGCGGCACGAGACGCGGTGCGAGCGCGAGACGCAGCGGCTGCGGGCGCCGGTTTCGCCTTCGTCGACGCGGCGGCGCTGGACGCGGCCGCGCGGGACACTGCGGGCGCCGCGGTCGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCTGGGGAGGGCACGCTTGACGTGCGGTTGCAAAAGCTTTTAACCTCGAAGCAGGCGCTGGAGTCGGAAGTGCGCAAGCTGAAGCTTCAGCTGAATGAAGAGCGCGCCGCCCGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCGGTGTCCGACGCGAAGGGCCGCGCGGCGCGGGCCGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCGCGGCTGCGGGCGCGCCAGGACCATCAGGACGGGCACGAGGAGCAGCTCAAGCAGGAGCGACGGAAACTGCAGAGAGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAAACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCAGCACTCCTGAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPADIPINEAVKDDIQKSAATNGHSNGSVDEQSRMNGRKNSEAHSNDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMYSGKTPEAVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARDTAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDGHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -