Ptre004247.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905333125.1
- Location
- HG995400.1:1103982-1117222[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 6.5e+03 -3.8 0.3 138 278 85 107 72 110 0.37 2 3 2.6e-78 5.2e-74 249.4 24.7 1 270 128 390 128 409 0.89 3 3 1 2e+04 -8.7 17.1 1 44 410 453 410 482 0.71
Sequence Information
- Coding Sequence
- ATGGTGCATCGTTCCGAGATGGCCACTCCGGACAATAGTGACGAGGAGAGCGGTGAAGCCTTTACCGACGGAGATTTCGGTGACTCCGATGATGAAACCGTCGTGGAGCGTGGTGAGGAAGCCAAACCTTCGCATATTCCTCTCAACGAAACCGTAAACGAAGGATTGCAGAAAACAAATTTAGCAACTAACGGCCATCCTCCTAGTAATGGTATGGATGAAAAACTAAATGAGAAGCCTAAACTTAATGGACGTAAAAATTGTGAGGAGCAGTCGAGTGACATGGAGAACCAGAACCTTGTAATATCGGATTTACGGAGAGACTCTCATGGGGATCAAAATCCTTCCATAGTCGGCATTCTCGGTGATCAACAGAACCATGCGGAGCAGCGACTAGCGGCGCGGCGGGCGGCTCGAGCGGAGGCCCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGGGAGCAGGAGGACCATGCCGACAAGGCATACGACATGTACGCAGAGACGGTGGGTCGCCGCGCGGGCACGCGACTGACGGCGCTGGCCCCGACCAGCGCGCTCTCGCCGCGCCGCAGCTCCGAGGACTCCGCCGATGACACCTTCAGCGTCAAGGAGCTTAGGCACGAGCTGAAGGAGGTCGAGGAGAAGTTCCGGAAGGCGATGATCCTAAATGCGCAACTGGACAATGATAAAGCGGCGCTCGGATACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGTCCAACTGCAGCGAGAACACCGAGAGAAATGCTCATCGCACGAGCGTTTAAAACGCGAGCACGAGTCCGTGTCGCGCGAGCTGAGCGCGGCGCGCGACGCGGTGCGCGCGCGCGACGCGGCCGCCGCCGCCGCCGGCTTCGCGTTCGTGGACGCCGCCGAGCTGCCCGCGCCCGCCGCGCCCGCCGCGCCCGGCCAGGTGCCAGCCCTCGCGCTCGTCTCGCACTCCGCGGAGAAACTGCTCAACGACGCCGGCGAGGGCACACTAGATGTCCGGTTGCAGAAGCTGCTCGGTTCGAAGCAAGCGCTGGAGTCCGAGGTGCGTAAGCTGAAGCTACAGCTGAACGAGGAGCGCGCCGCGCGACAGAACGGCGTCGCCAACCACCACGACGACGAGTACGAGAACGAAATGGAGGCGCTGCGCAAGTCGGCGGGCGAGGCGAAGGCGCGGGCGGCGCGTGCCGAGGCCGAGGCCGCGCTGCAGGGCGCGCAGGCGGCGCGGCTCGAGGCGCAGCTGGCGAGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCTGGAGCGGCGCCGCCTGCAGAGAGAGGCTCGCGAGGCCCTCAATCGAGTGGAGGAGTTGGAAACCGAGAACAGTCATCTGACGAAGCGCCTCGACAAGCTGAAGAACGCCAAATCCGCACTCCTAAAGGACCTGTGA
- Protein Sequence
- MVHRSEMATPDNSDEESGEAFTDGDFGDSDDETVVERGEEAKPSHIPLNETVNEGLQKTNLATNGHPPSNGMDEKLNEKPKLNGRKNCEEQSSDMENQNLVISDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGTRLTALAPTSALSPRRSSEDSADDTFSVKELRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYVQLQREHREKCSSHERLKREHESVSRELSAARDAVRARDAAAAAAGFAFVDAAELPAPAAPAAPGQVPALALVSHSAEKLLNDAGEGTLDVRLQKLLGSKQALESEVRKLKLQLNEERAARQNGVANHHDDEYENEMEALRKSAGEAKARAARAEAEAALQGAQAARLEAQLARLRARQDHQDEHEEQLKLERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_01179509;
- 80% Identity
- -