Crub017939.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949152445.1
- Location
- OX424533.1:2824900-2839927[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.029 1.3e+03 -0.3 0.2 45 91 55 102 37 107 0.74 2 4 1.5e-80 6.9e-76 256.8 22.9 1 297 122 411 122 413 0.90 3 4 1 4.7e+04 -6.2 13.8 1 48 410 456 410 474 0.73 4 4 1 4.7e+04 -6.1 10.8 131 169 440 475 425 488 0.40
Sequence Information
- Coding Sequence
- ATGGGACAGCGTTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGTGGGGACGCCTTCACTGACGGTGATTTTGGTGATTCCGATGACGAAACGCTAGTCGAACGCCCTGATGAAGCGAAGCCTGCTCATATACCGGTCAATGAAGCTGTAAAAGATGATATTCAGAAGAATGCTGCTACTAATGGCCACACCAATGGTGATGTAGATGAGCAGCCCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTGTCGGATTTGCGCCGAGATTCACACGGTGACCAGAATCCATCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGTCGAGCGGCGCGGGCTGAAGCGAGGGAGATACGAATGCGGGAGCTAGAGAGACAGCAGCGGGAACAAGAGGACCATGCGGACAAGGCGTACGACATGTATGCCGGAAAGACACCAGAGACGGTGGGTCGTCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCGCCCAGACGAAGCTCCGAAGACTCCGTCGATGATGGCTTCAGTATCAAGGACCTTAGGCACGAGTTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCACAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGTTGGAGCTGTTGAAGGACCGGATAGAGGAGCTGCATGAGGAATATGCACAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCATTTGAGCGTCTAAAGCGCGAACACGAGTCCGTGTCGCGCGAGCTGAGCGCGGCGCGGGACGCCATCCTGGCGCGCGACGCGGCCGCCGCGGGCGCCGGCTTCGCCTTCGTGGAGGCCGCCGCGCTGGAGCCCGGCGCGCGCGCCGCGGCCGGCGCCGGCGTGGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCACCAGGCGCAGCAGCTGCTCAATGATGCGGGAGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGTTCGAAGCAGGCGCTGGAGTCGGAAGTACGCAAATTGAAGCTGCAGCTGAACGAAGAACGCGCCGCCCGGCAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTGCGAAAGTCAGTATCGGAAGCGAAGGGTCGAGCTGCTCGCGCCGAGGCGGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGGCTGGAGGCGCAGCTGGCGAGACTGCGCGCGCGGCAGGGACACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCTCGGGAAGCACTGAACCGGGTTGAGGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCGGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETLVERPDEAKPAHIPVNEAVKDDIQKNAATNGHTNGDVDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAILARDAAAAGAGFAFVEAAALEPGARAAAGAGVGAVPALALVTHQAQQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKSVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQGHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -