Hass010046.1
Basic Information
- Insect
- Helicoverpa assulta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029618815.1
- Location
- CAWLCW010000010.1:13269111-13284035[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 4.6e+03 -2.5 0.3 55 91 66 103 37 106 0.57 2 3 1.6e-78 2.5e-74 251.1 23.1 1 297 123 410 123 412 0.88 3 3 2 3.3e+04 -7.5 14.9 1 48 409 455 409 487 0.63
Sequence Information
- Coding Sequence
- ATGATGGGCCAGCGCTCTGAACTGGCTACGCCTGACAATAGTGACGAAGAGAGCGGAGAAGCCTTCACTGATGGTGATTTTGGAGATTCTGATGACGAAACTATCGTCGAACGCCATGAAGAGGCTAAGCCTTCACACTTGCCAATCAATGAAACTGTGAATAAGGATATTGAAAAAATTGCAGCTACTAATGGACACTCTAATGGAAGCGTAGATGGGTCACCCAGAATGAACGGTCGCAAAAACAGTGAAGCCCATTCAAGTGATTCAGAAAACCAAAGCTTAGTGTTATCAGATTTGCGCAGAGATTCGCATGGTGACCAAAATCCTTCAATAGTTGGCATTCTTGGCGATCAACAAAACCATGCGGAGCAGAGActggcggcgcggcgggcggcgagGGCGGAGGCGCGCGAAATTCGCATGCGCGAGTTGGAGCGCCAGCAGCGCGAACAGGAGGACCATGCCGACAAGGCCTACGATATGTATGCGGGGAAAACACCAGAGACAGTGGGACGCCGACCCCGACTGGCGGCGCTCAGCCCCGCCGTGCACTCACCACGACGCAGCTCTGAGGACTCCGCCGATGATGGATTCAGCATTAAGGACCTTAGGCACGAGTTGAAGGAGGTGGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCCCTCGGGTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTATGCGCAACTACAGCGCGAGCACAAGGAGAAATGCTCAGCATTCGAGCGCTTACGTCGCGAGCACGAGTCCGTCGTGGCCTCTCTAACACTCGCGCGGGACGCCGTGCGAGCCCGCGACGCGGCGGCCGCCAGCGCGGGCTTCGCCTTCATGGACGCGGCGGCGCTGGAGCCGGCGGCGCGGGGCAGTGCGGGGGAAGCAGTGGGTGACGTGCCGGCGCTGGCGCTCGTCACGCACGAGGCGCAGCAGCTGCTGCATGATGCCGGGGAGGGGACGCTCGACGTGCGGTTGCAGAAGCTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAAGTTCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGAGCCGCCAGACAGAACGGCGTCGCCAACCATCACGACCAAGAGTACGAGAACGAATTGGAGACAGTCCGCAAGTCAGTAGCGGAGGCTAAAGGGCGGGCCGCCCGCGCCGAGGCGGAGGCGGCGCTGCAGGCCGCGCACGTGGCCCGCCTCGAGGCGCAGCTCGCGCGCCTCCGCGCCCGCCAGGACCACCACGACGAGCACGAGGACCAGCTCAAGCAGGAGCGGCGGCGTCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAGGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTGGACAAACTCAAGAATGCCAAGTCCGCGTTGTTGAAAGACCTGTGA
- Protein Sequence
- MMGQRSELATPDNSDEESGEAFTDGDFGDSDDETIVERHEEAKPSHLPINETVNKDIEKIAATNGHSNGSVDGSPRMNGRKNSEAHSSDSENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRPRLAALSPAVHSPRRSSEDSADDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAFERLRREHESVVASLTLARDAVRARDAAAASAGFAFMDAAALEPAARGSAGEAVGDVPALALVTHEAQQLLHDAGEGTLDVRLQKLVSSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKSVAEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHHDEHEDQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_01285560;
- 80% Identity
- -