Nfim012517.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905163415.1
- Location
- LR990930.1:2197781-2209336[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.68 1.2e+04 -3.8 0.4 59 89 69 100 50 104 0.46 2 3 6.5e-81 1.1e-76 258.9 23.9 1 297 122 411 122 414 0.91 3 3 2 3.5e+04 -7.0 15.1 1 49 410 457 410 487 0.56
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCGACGCCTGACAATAGTGACGAGGAGAGTGGGAAAGCCTTCACTGACGGAGATTTTGGTGATACCGATGACGAAATGCTCGTCGAACGCCCTGATGAAGCGATGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATACAGAAGAATGCTGCCACTAATGGCCACTCCAATGGTAGTGCGGATGAGCAGCCCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGGAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGACCAGAACCCCTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCTGAAGCGAGGGAGATACGAATGCGGGAGCTAGAGAGACAGCAGCGCGAACAAGAGGACCATGCGGACAAGGCATACGATATGTATGCGGGAAAGACACCAGAGACGGTGGGTCGCCGCGGCACTACGAGGCTGACGGCGCTCAGCCCTGCCGTGCACTCGCCCAGACGAAGCTCTGAAGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGcGCGAACACAGAGAAAAATGCTCATCGTTTGAGCGTCTAAAGAGGGAACACGAGTCCGTGTCCCGCGAGCTCAGCGCAGCGCGGGACGCCGTGCGCGCGCGGGACGCGGCCGCCGCCGGCGCCGGCTTCGCCTTCGTGGACGCCGCCGCGCTGGACCCCGCCGCCCGCGACACGGCCGGGGCCGCCGTCGGCGCCGTGCCGGCCCTGGCGCTGGTGACGCACCAGGCGGAGCAGCTGCTCAATGATGCGGGAGAGGGCACGCTTGATGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAAGCGCTGGAGTCGGAGGTGCGCAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCCGGCAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCAGTGTCGGAAGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCAGGACCACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCTCGGGAAGCACTCAACCGGGTCGAGGAGCTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGKAFTDGDFGDTDDEMLVERPDEAMPAHIPINEAVKDDIQKNAATNGHSNGSADEQPRMNGRKNSEAHSSDMGNQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGTTRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDPAARDTAGAAVGAVPALALVTHQAEQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQDHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -