Agaa002499.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905146925.1
- Location
- LR989854.1:11994136-12006037[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-82 1.3e-77 261.7 16.6 1 297 123 417 123 419 0.91 2 2 1 2.6e+04 -6.7 15.7 1 47 416 461 416 480 0.74
Sequence Information
- Coding Sequence
- ATGGGGCAGCGATCTGAAGTGGCCACGCCGGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGCTGACTTCGGGGATTCTGATGATGACACCATTGTGGAGCGACACGATGCAGCGAAATCTTCACACATACCTATTAATGAAACAGTCAACAAAGAAGTTCAGAAAACCGCATCTATAAATGGTCATACTAATGGTGATGCGGTAGATGAACAGCCAAGATTGAATGGTCGCAAGATTAGTGGGAGTCAATCGAGTGATGCTGAAAACCAAAGCTTAGTCTTAACTGATTTGCGCAGAGATTCTCACGGCGATCAGAATCCTTCCATAGTTGGCATACTCGGCGATCAACAGAACCATGCTGAACAGCGACTTGCGGCGCGACGCGCGGCTCGCGCTGAAGCCCGAGAGATCCGCATGCGGGAGCTAGAGCGGCAGCAGCGGGAACAGGAGGACCATGCGGACAAGGCATACGACATGTATGCGGGGAAGACGCCAGATCCGGTGGCTCGGCGCGGCGGCACCCGGCTGGCGGCGCTCAGTCCCGCGGGCGTGCACTCGCCGCGGCGCAGCTCTGAGGACTCCGCTGACGACACGTTCAGCATCAAGGACCTCAGGCATGATTTGAAGGAGGTCGAGGAGAAGTTCCGGAAGGCGATGATATTGAATGCACAGCTGGACAATGATAAGGCGGCACTGGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTTCACGAAGAGTACGCGCAACTACAGCGCGAGCATAAAGAGAAGTGCTCATCATTCGAGCGTTTAAAGCGCGAGCACGAGTCTGTGACGCGCGAACTGAACGCGGCGCGGGGAGCGGTGCGAGCGCGGGACGCGGCCGCCGCCGCCGCCGGCTTCGCCTTCGTGGACGCCCCCGCCGAGCCCCCCGCCACCCCCGCCGCGCCCGCCACCCCCGCCAGCCCCGCCGCCGCGCCCGAGCCTTCGCTGGCGCTCGTCAGCCACGGCGCCGAGCAACTGCTCAACGACGCCGGGGAGGGCACGCTCGATGTGCGGTTGCAAAAGCTGTTGAGCTCGAAACAGTCGCTAGAGTCGGAAGTACGTAAACTGAAGCTGCAGCTGAACGAGGAACGCGCGGCGAGACAGAACGGAGTGTCCAACCACCACGAACACGAATACGAGAACGAACTGGAATCAGCGCGCAAGGCTGTGTCAGAAGCTAAGGCTCGAGCGGCACGCGGCGAGGCAGAAGCGGCCTTGCAAGCGGCACTCGTGGCACGGCTCGAAGCACAGCTGGCGCGGCTGCGGGCCAGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGAGAGGCTCGGGAGGCGCTCAATCGGGTGGAAGAATTGGAAACTGAGAACAGCCACCTCACCAAGCGACTAGACAAGCTTAAGAACGCCAAGTCAGCCCTCCTGAAGGATCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDADFGDSDDDTIVERHDAAKSSHIPINETVNKEVQKTASINGHTNGDAVDEQPRLNGRKISGSQSSDAENQSLVLTDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPDPVARRGGTRLAALSPAGVHSPRRSSEDSADDTFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVTRELNAARGAVRARDAAAAAAGFAFVDAPAEPPATPAAPATPASPAAAPEPSLALVSHGAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVSNHHEHEYENELESARKAVSEAKARAARGEAEAALQAALVARLEAQLARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00001195;
- 80% Identity
- -