Xict015856.1
Basic Information
- Insect
- Xanthia icteritia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949128155.2
- Location
- OX421941.2:2762608-2776718[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0055 2.3e+02 2.1 0.9 39 91 49 102 35 107 0.81 2 3 1.7e-81 7.3e-77 259.8 24.8 1 297 122 411 122 413 0.91 3 3 0.91 3.8e+04 -5.2 17.2 1 49 410 457 410 484 0.72
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGATGGAGATTTTGGTGATTCCGATGATGAGACGATCGTTGAACGCCTGGATGAAGCTAAGCCTGCTGACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCGGCTACTAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCAAGAATGAATGGCCGTAAAAATAGTGAAGCTCATTCAAATGATATGGAAAACCAAAGTTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCAGAGCAAAGGTTAGCAGCGCGGCGAGCGGCGCGGGCTGAAGCGCGAGAAATACGCATGCGTGAGCTGGAGAGACAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATTCCGGAAAGACACCAGAGGCGGTGGGTCGTCGAGGCGCTACGAGACTGACGGCGCTCAGCCCGGCCGTACACTCACCGAGACGAAGCTCTGAGGACTCCGTCGATGATGGCTTCAGCATCAAGGATCTTAGGCATGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCTTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTTAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGTCTAAAGCGAGAACACGAGTCCGTAACTCGCGAGCTAAGCGCGGCACGAGACGCGGTGCGAGCGCGAGACGCGGCGGCTGCGGGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCGTTGGACGCGGCCGCGCGGGACACTGCGGGCGCCGCGGTCGGGGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCTGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTGGAGTCGGAAGTGCGCAAACTGAAGCTACAGCTGAATGAAGAACGCGCCGCGCGACAGAACGGAGTCACCAACCATCACGACCAAGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCGGTGTCGGACGCGAAGGGCCGCGCGGCGCGCGCCGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTGGAGGCGCAGCTGgcccgcctgcgcgcgcgccagGAGCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTTAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPADIPINEAVKDDIQKSAATNGHSNGSVDEQSRMNGRKNSEAHSNDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSGKTPEAVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARDTAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSDAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -