Apul003856.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905475315.1
- Location
- FR997766.1:13211269-13222709[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.27 8.4e+03 -3.5 0.5 57 88 68 100 36 105 0.44 2 3 6.1e-82 1.9e-77 261.3 16.7 1 297 123 417 123 420 0.91 3 3 1 3.1e+04 -6.6 16.1 1 48 416 462 416 491 0.70
Sequence Information
- Coding Sequence
- ATGGGGCAGCGATCTGAAATGGCCACGCCGGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGCTGACTTCGGGGATTCTGATGATGACACCATTGTGGAGCGACACGATGCAGCGAAATCTTCACACATAACTATTAATGAAACAGTCAACAAAGAAGTTCAGAAAACCGCATCTACGAATGGCCATACTAATGGTGATGTGGTAGAGGAACAGCCAAGATTGAATGGTCGCAAGATTAGTGGGAGTCAATCGAGTGATGCTGAAAACCAAAGCTTTGTCTTAACTGATTTGCGCAGAGATTCTCACGGCGATCAGAATCCTTCCATAGTTGGCATACTCGGCGATCAACAAAACCATGCTGAACAGCGACTTGCGGCGCGACGTGCGGCACGCGCTGAGGCCCGGGAGATACGCATGCGGGAGCTGGAGCGGCAGCAGCGGGAACAGGAGGACCATGCGGACAAGGCATACGACATGTATGCGGGGAAGACGCCAGATCCGGTGGCTCGGCGCGGCGGCACCCGGCTGGCGGCTCTCAGTCCCGCCGGCGTGCACTCGCCGCGGCGCAGCTCTGAGGACTCCGCTGACGACACGTTCAACATCAAGGACCTCAGGCATGATTTGAAGGAGGTCGAGGAGAAGTTCCGGAAGGCGATGATATTGAATGCACAGCTGGACAATGATAAGGCGGCGCTGGGCTACCAGCTGGAACTGCTCAAGGATAGGATAGAGGAGCTACACGAAGAGTACGCGCAACTACAGCGCGAGCATAAAGAGAAGTGCTCATCATTCGAGCGTCTAAAGCGCGAGCACGAGTCTGTGACGCGCGAATTGAACGCGGCGCGGGGAGCGGTGCGAGCGCGGGACGCGGCCGCCGCCGAAGCCGGCTTTGCCTTCGTGGACGCCCCCGCCGAGCACCCCGCGACCCCCGCCACGCCCGGCGGCCCCGCCAGCCCCGCGGCCGCGCCCGAGCCTTCGCTGGCGCTCGTCAGCCACGGTGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGATGTGCGGTTGCAAAAGCTGTTGAGCTCGAAACAGTCGCTAGAGTCGGAAGTACGTAAACTGAAGCTGCAGTTGAACGAGGAGCGCGCGGCGAGACAAAACGGAGTCTCCAACCACCACGAACATGAATACGAGAACGAACTGGAATCGGCGCGCAAGGCTGTGTCAGAAGCGAAGGCCCGAGCGGCGCGCGGCGAGGCGGAAGCGGCCTTGCAAGCGGCACTCGTGGCACGGCTCGAAGCACAACTAGCGCGGCTGCGGGCCAGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGAGAGGCTCGGGAAGCGCTCAATAGGGTGGAAGAATTGGAAACTGAGAACAGCCACCTCACCAAGCGACTAGACAAGCTTAAGAACGCCAAGTCAGCCCTCCTGAAGGATCTGTGA
- Protein Sequence
- MGQRSEMATPDNSDEESGDAFTDADFGDSDDDTIVERHDAAKSSHITINETVNKEVQKTASTNGHTNGDVVEEQPRLNGRKISGSQSSDAENQSFVLTDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPDPVARRGGTRLAALSPAGVHSPRRSSEDSADDTFNIKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVTRELNAARGAVRARDAAAAEAGFAFVDAPAEHPATPATPGGPASPAAAPEPSLALVSHGAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVSNHHEHEYENELESARKAVSEAKARAARGEAEAALQAALVARLEAQLARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00001195;
- 80% Identity
- -