Aput000564.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000013.1:2064610-2077043[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0036 79 2.7 0.4 42 91 52 102 35 107 0.85 2 3 8.4e-81 1.8e-76 257.6 22.1 1 297 122 411 122 413 0.89 3 3 0.5 1.1e+04 -4.4 15.6 1 49 410 457 410 484 0.71
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCCGAAGTTGCTACGCCGGACAATAGTGATGAGGAGAGTGGAGACGCCTTCACTGATGGAGATTTTGGTGATTCCGATGATGAAACCCTCGTCGAACGCCCTGATGAAGCTAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATGCTCAGAAGAGTACTGCTACTAATGGCCACTCTAATGGTACTGTAGATGAGCATCCCAGAGTTAATGGTCGTAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTTGTACTATCAGATTTGCGTCGAGATTCACACGGCGATCAGAATCCATCAATCGTTGGCATTCTCGGCGACCAACAGAACCATGCAGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCGGAGGCGCGCGAGATACGAATGCGGGAGCTGGAGAGACAGCAGCGCGAACAGGAGGACCATGCTGACAAGGCATACGATATGTATGCGGGAAAGACACCAGAGACGGTGGGACGCCGAGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCTCCCAGGCGAAGCTCTGAAGACTCCATCGATGATGGGTTCAGCATCAAGGACCTTAGACACGAGTTAAAAGAGGTTGAGGAGAAGTTTCGCAAGGCGATGATCCTGAACGCGCAGCTTGACAACGACAAGGCGGCGCTTGGCTACCAGCTGGAACTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAATATGCGCAGCTGCAGCGCGAACACAAAGAAAAATGCTCATCGTTCGAGCGTCTAAAGCGCGAGCACGAGTCCGTGTCCCGCGAGCTGAGCGCAGCCCGGGACGCGGTGCGCGCGCGGGACGCGGCCGCGGCGGGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCGCTGGAGCCCGGCGCGCGGGACACGGCCGGCGGCCCCGTGGGGGAGGTGCCCTCGCTGGCGCTCGTGACGCACCAGGCTGAGCAGCTGCTCAATGATGCGGGGGAGGGGACGCTTGACGTACGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCAGAGGTGCGCAAACTGAAGCTGCAGTTGAATGAGGAACGAGCCGCACGACAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTCCGGAAGGCGGTGTCGGAGGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTCGGGGCGGCGCACGTGGCGCGCCTGGAGGCCCAGCTGGCGCGGCTGCGGGCCCGCCAGGAGCACCAGGACGAGCACGAGGAACAGCTCAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTGAACCGGGTTGAGGAGTTGGAAACAGAAAACAGCCACCTTACGAAACGACTCGACAAACTCAAGAACGCGAAGTCGGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETLVERPDEAKPAHIPINEAVKDDAQKSTATNGHSNGTVDEHPRVNGRKNSEAHSSDMENQSFVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALEPGARDTAGGPVGEVPSLALVTHQAEQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALGAAHVARLEAQLARLRARQEHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -