Lole025635.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_950371165.1
- Location
- OX493400.1:3170227-3184622[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.034 8.6e+02 0.5 0.6 43 91 53 102 32 107 0.76 2 3 1.1e-79 2.7e-75 254.9 22.7 1 297 122 416 122 419 0.89 3 3 2 5.1e+04 -8.9 15.5 1 44 415 458 413 488 0.58
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCTGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGAGACGCCTTCACTGACGGAGATTTCGGTGATTCTGATGACGAAACGCTCGTGGAACGCGCTGATGAAGCTAAGCCTGCTCACATGCCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAGTGCTGCTACTAATGGTCACTCTAACGGCAGTTTAGATGAGCAACCCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGTCCAGTATTATCGGATTTGCGCCGAGACTCACACGGCGACCAGAATCCGTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCCGAGGCGCGAGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGTGAGCAGGAGGATCATGCGGACAAGGCGTACGATATGTACGCCGTGAAGACTCCAGAGACGGTGGGTCGTCGCGGCGCCACGCGGCTCGCGGCGCTGAGCCCGGCCGTACACTCCCCGAGGCGAAGCTCTGAAGACTCCGTCGACGATGGCTTCAACATCAAGGACCTTAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAATGACAAGGCGGCGCTCAGCTACCAGCTGGAGCTACTGAAGGACAGGATAGAGGAGCTGCACGAGGAATACGCGCAGCTGCAGCGCGAGCACAGAGAGAAATGCTCATCATTCGAGCGACTAAAGCGCGAGCACGAGTCCGTGTCTCGCGAGCTGAACTGTGCGCGGGACGCCGTGCGCGCGCGGGACGCTGCGGCCGCCGCCGCGGGCTTCGCCTTCGTGGACGCGGCGCAGCTGGAGCCCGAGGGGGGCGCGGGGGCAGAGGGGGCAGCGGGGGCCGAGGGGGGGGGCGCCGTGCCCGCGCTGGCGCTCGTCACGCATCAGGCGCATCAACTGCTCAACGATGCGGGGGAGGGCACGCTTGACGTACGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTAGAGTCGGAAGTCCGCAAGCTGAAGCTGCAGCTCAACGAGGAACGAGCCGCGCGCCAGAACGGAGTCACCAGCCATCACGACCAGGAGTACGAGAATGAATTGGAAACAGTCCGCAAGGCGGTGTCGGAGGCGAAggggcgggcggcgcgcgcggagGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGGCTGGAGGCGCAGCTGGCGAggctgcgcgcgcgccaggACCATCAGGACCAGCACGAGGAACTGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAAGAATTGGAGACGGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCCAAGTCTGCGCTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETLVERADEAKPAHMPINEAVKDDIQKSAATNGHSNGSLDEQPRMNGRKNSEAHSSDMENQSPVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAVKTPETVGRRGATRLAALSPAVHSPRRSSEDSVDDGFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALSYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELNCARDAVRARDAAAAAAGFAFVDAAQLEPEGGAGAEGAAGAEGGGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTSHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDQHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -