Snon007722.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- lrrfip2
- Assembly
- GCA_017933935.1
- Location
- JADWQK010000361.1:148082-162573[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.041 7.8e+02 0.8 0.8 43 91 53 102 31 107 0.78 2 3 7.4e-80 1.4e-75 256.0 23.3 1 297 122 411 122 413 0.89 3 3 3 5.8e+04 -7.9 14.4 1 47 410 455 410 475 0.70
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTAGCTACGCCTGACAATAGTGACGAGGAGAGCGGGGATGCCTTTACTGACGGAGATTTTGGTGATTCCGATGAAGAAACGATCGTGGAACGCCATGATGAAGCTAAGCCTGCTCACATACCTGTCAATGAAGCAGTAAAGGATGATATTCAGAAGAGTGCGACTACTAATGGCCACTCTAATGGTAGCCTAGATGAGCAGACTAGAATTAATGGACGTAAAAATAGTGAAGCTCATTCAAGTGATATAGAAAACCAAAGCTTAGTGTTATCCGATTTACGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGAGATCAGCAGAATCATGCAGAGCAGAGGTTAGCAGCGCGACGAGCAGCGCGGGCGGAAGCTCGAGAAATACGCATGCGTGAGCTGGAAAGACAGCAGCGCGAACAGGAAGACCATGCCGACAAGGCGTACGATATGTACGCTGGCAAGACACCAGAGGTGGTGGGGCGTCGCGGAGCCTCTAGGCTGACGGCGCTAAGCCCGGCCGTACACTCACCAAGACGAAGCTCCGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGACCTTAGGCATGAGTTGAAGGAGGTGGAGGAAAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAGCTGCTTAAGGACAGGATAGAGGAGCTTCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCATTCGAGCGTTTAAAGCGGGAACATGAGTCAGTAACGCGAGAGCTGAGCGCGGCGCGAGACGCCGTGCGGGCTCGGGACGCGGCGGCCGAGGGCGCGGGCTTCGCCTTCGTGGACGCCGCGGCACTGGACGCGCCCGAGCGGGGGCAGGCCGGCGCGCCCGTCGGCGTCGTGCCCGCGCTGGCGCTGGTCACGCAGCAGGCGCAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGATGTGCGGTTGCAAAATCTGTTATCCTCGAAGCAGGCGTTGGAGTCAGAAGTACGTAAGTTAAAGCTACAGCTGAATGAAGAACGCGCCGCCAGACAGAACGGAGTCGCCAACCATCACGATCAAGAGTATGAGAACGAACTGGAGACAGTGCGCAAGGCGGTGGCGGAGGCGAAGGGTCGGGCGGCGCGCGCTGAGGCAGAGGCCGCACTACAGGCCGCACATGTCGCACGACTTGAGGCACAACTAGCACGGAGCCGCGCACGCCAGGGGCATCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGAGAGGCTCGGGAAGCGCTCAATCGAGTTGAAGAATTGGAAACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTGAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDEETIVERHDEAKPAHIPVNEAVKDDIQKSATTNGHSNGSLDEQTRINGRKNSEAHSSDIENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPEVVGRRGASRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAEGAGFAFVDAAALDAPERGQAGAPVGVVPALALVTQQAQQLLNDAGEGTLDVRLQNLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVAEAKGRAARAEAEAALQAAHVARLEAQLARSRARQGHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -