Doo029721.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- lrrfip2
- Assembly
- GCA_948252095.1
- Location
- OX411718.1:3849785-3864861[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0064 2.5e+02 1.8 0.8 43 91 53 102 37 107 0.82 2 3 7.1e-81 2.7e-76 257.8 24.7 1 297 122 412 122 414 0.91 3 3 1 3.9e+04 -5.8 17.8 1 49 411 458 411 485 0.72
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCTGAAGTAGCCACGCCTGACAATAGTGACGAGGAAAGCGGGGACGCCTTCACAGACGGAGATTTTGGTGATTCCGATGATGAGCCGATCGTCGAACGCCTTGATGAAGCTAAGCCTGCTCACATACCGATCAACGAAGCTATAAAAGATGATATTCAGAAGAGTGCGGCTACGAATGGTCACTCTAATGGTAGTGTAGATGAGCAGTCAAGAATGAATGGCCGTAAAAATAGTGAAGCACATTCAAGTGATATGGAAAATCAAAGCTTAGTATTATCGGATTTACGCCGAGATTCACACGGCGATCAGAATCCTTCAATCGTTGGCATTCTCGGCGATCAGCAGAATCATGCGGAGCAGAGGTTAGCAGCGCGGCGAGCGGCGCGGGCTGAAGCGCGAGAAATACGCATGCGCGAGCTGGAGAGGCAGCAGCGTGAACAGGAGGACCATGCGGACAAGGCTTACGATATGTACGCCGGCATGAAGACACCAGAGACGGTGGGTCGTCGTGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGATCTTAGGCATGAGTTGAAGGAGGTGGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGTCTAAAGCGGGAACACGAGTCCGTAACTCGGGAGCTGAGCGCGGCGCGAGACGCGGTGCGAGCGCGAGATGCGGCGGCGGCGGGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCGCTAGACGCGGCGGCGCGGGATACTGCGGGCGCCGCGGTCGGCGCCGTGCCCGCGCTGGCGCTGGTCACGCACCAGGCGCACCAGCTGCTCAATGATGCTGGGGAGGGCACGCTTGACGTGCGGTTGCAAAAGCTGTTAACCTCGAAGCAGGCGCTGGAGTCGGAGGTACGCAAGTTGAAACTACAGTTGAATGAAGAACGCGCCGCGAGACAGAACGGAGTCGCCAACCATCACGATCAAGAGTACGAGAATGAACTGGAAACGGTCCGCAAGGCGGTGTCAGAGGCGAAGGGGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGGCTGGAGGCGCAACTGGCGCGCCTGCGGGCCCGCCAGGAGCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAACGACGTAAACTGCAGAGAGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDEPIVERLDEAKPAHIPINEAIKDDIQKSAATNGHSNGSVDEQSRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGMKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARDTAGAAVGAVPALALVTHQAHQLLNDAGEGTLDVRLQKLLTSKQALESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -