Clig029448.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905163465.1
- Location
- LR990958.1:15008635-15017598[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-80 1.3e-75 255.2 27.0 1 297 121 408 121 410 0.92 2 2 1 3e+04 -6.2 16.5 1 48 407 453 407 481 0.72
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCTGAAGTGGCCACACCTGACAATAGTGACGAGGAGAGCGGTGATGCTTTTACTGATGGAGATTTTGGGGATTCGGATGATGAAACTATTGTTGAACGTCGCGATGAGGCCAAACCGTCCCACATACCCATCAATGAAACTGTGAATGAAGATATTCATAAAAATAGCGCTACTAATGGGCACTCCAGTTTAGAAGAGCAGCCTAGAATTAATGGCCGCAAGAACAGTGAGATCAGTCAATCAAGTGATGGGGATAATCAAAGCTTAGTTTTATCCGATTTGCGACGAGATTCTCATGGTGATCAAAACCCTTCAATAGTGGGCATTCTCGGCGACCAGCAGAACCATGCTGAACAGCGGCTGGCAGCTCGTCGGGCGGCGCGAGCGGAGGCGCGCGAGATACGCATGCGCGAATTAGAGAGACAACAGCGCGAACAGGAGGACCATGCGGACAAAGCGTACGATATGTATGCGGGCAAGACGCCAGAGACGGTGGTCCGTCGTGGTGGCGCGCGGCTGGCGGCGCTCAGTCCGGCCGGCGTGCACTCACCGCGACGAAGCTCCGAGGACTCGGTGGATGATGCCTTCAGCATCAAAGATCTCAGGCACGAGCTGAAGGAGGTCGAGGAGAAGTTCCGCAAAGCGATGATTCTGAACGCTCAGTTGGATAACGATAAGGCGGCGCTAGGCTACCAGCTGGAACTGCTCAAGGATAGAATAGAGGAACTGCACGAAGAGTACGCGCAACTCCAGCGCGAACATAGAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGTGAACACGAGGCGGTGACGCGCGAGCTGGGCGCGGCGCGGGACGCCGTGCGCGCGCGCGACGCGGCCGCGCACGCCGCCGGGTTCGCCTTCGTGGACGCCGCCGCGCGCGCCGAGCCCGAGCGCGCCGCCGCCGCCGCCGCCCTGCCCGCGCTCGCGCTCGTCACGCACTCCGCGCAGCAGCTGCTCGACGACGCCGGCGAGGGCACGCTCGATGTACGGTTGCAAAATCTTCTGAGTTCGAAACAGGCATTAGAGTCAGAGGTGCGCAAATTGAAGCTACAGCTGAACGAAGAACGCGCCGCACGACAAAACGGAGTAGCAAACCACCACGACAGCGAATACGAGAACGAACTGGAGACTGTGCGAAAGTCGGTGTCTGAGGCGAAGGCGCGGGCAGCGCGTGCCGAGGCCGAGGCGGCGCTACAGGCCGCGCACGTGGCGCGCCTCGAGGCGCAGCTGGCGCGGCTGCGGGCGCGCCACGCGCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCCGCCTGCAGCGCGAGGCTCGGGAAGCACTCAACCGGGTTGAAGAGTTGGAGACGGAGAACAGCCACCTCACGAAACGACTAGATAAACTCAAGAATGCCAAGTCCGCACTGCTGAAAGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERRDEAKPSHIPINETVNEDIHKNSATNGHSSLEEQPRINGRKNSEISQSSDGDNQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVVRRGGARLAALSPAGVHSPRRSSEDSVDDAFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHEAVTRELGAARDAVRARDAAAHAAGFAFVDAAARAEPERAAAAAALPALALVTHSAQQLLDDAGEGTLDVRLQNLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDSEYENELETVRKSVSEAKARAARAEAEAALQAAHVARLEAQLARLRARHAHQDEHEEQLKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00017358;
- 80% Identity
- -