Ncom008608.1
Basic Information
- Insect
- Noctua comes
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_963082995.1
- Location
- OY720275.1:2159522-2170106[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.19 5.2e+03 -3.0 0.3 34 89 70 100 49 105 0.46 2 3 5.7e-81 1.6e-76 258.1 24.5 1 297 122 411 122 414 0.90 3 3 1 2.8e+04 -6.7 14.7 1 49 410 457 410 484 0.56
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGAAAGCCTTCACTGACGGAGATTTTGGTGATTCCGATGACGAAATGGTCGTCGAACGCCCTGATGAAGCAAAGCCTGCTCACATACCGATCAATGAAGCTGTAAAAGATGATATTCAGAAGAATGCTGCCACTAATGGCCACACCAATGGTAGTGCGGATGAGCAGTTCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGGAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGACCAGAGTCCCTCAATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCTGAAGCGAGGGAGATACGAATGCGGGAGCTAGAGAGACAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATGCGGGAAAAACTCCAGAGACGGTGGGTCGCCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCTGCCGTGCACTCGCCCAGACGAAGCTCTGAGGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGATAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGTGAACACAGAGAAAAATGCTCATCGTTCGAGCGTCTAAAGCGAGAACACGAGTCCGTGTCCCGCGAGCTCAGCGCGGCGCGGGACGCCGTGCGCGCGCGTGACGcggccgccgccggcgccgggTTCGCCTTCGTGGACGCCGCCGCGCTGGACGCCGGCGCCAGGGACACGGCCGGCGCCGCCGTGGGCGCCGTGCCGGCCTTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCAATGATGCGGGAGAGGGCACGCTTGATGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCCGGCAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCAGTGTCGGAAGCGAAggggcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTCGAGGCGCAGCTGCAGCGCCTGCGCGCGCGACAGGACCACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTGAACCGGGTCGAGGAGCTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCAAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGKAFTDGDFGDSDDEMVVERPDEAKPAHIPINEAVKDDIQKNAATNGHTNGSADEQFRMNGRKNSEAHSSDMGNQSLVLSDLRRDSHGDQSPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDAGARDTAGAAVGAVPALALVTHQAQQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQDHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -