Msep014270.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030763345.1
- Location
- CM061178.1:21149275-21173592[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.026 9.7e+02 -0.1 0.4 43 91 53 102 35 107 0.74 2 3 6.3e-81 2.4e-76 258.0 24.7 1 297 122 411 122 413 0.89 3 3 1 3.8e+04 -5.5 16.7 1 49 410 457 410 483 0.73
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAAGAGAGTGGAGACGCCTTCACTGACGGAGATTTTGGCGATTCCGATGACGAAACCATCGTGGAACGCCTTGACGAAACTAAGCCTGCACAGATGCCGATCAACGAAGCTGTAAAAGATGATGTTCAGAAGGGTGCTGCTACTAATGGACACTCTAATGGTAGTGTAGATGAGCAGCCCAGAATGAATGGCCGGAAGAATAGTGAAGCTCATTCAAGTGATATGGAAAACCAAAGCTTAGTGTTATCGGATTTACGTCGAGATTCACACGGTGACCAGAATCCTTCAATCGTTGGCATTCTAGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGTCGAGCGGCGCGGGCGGAAGCGCGAGAGATACGCATGAGGGAGCTGGAGAGACAGCAGCGCGAACAGGAGGACCATGCTGATAAGGCGTACGATATGTATGCCGGCAAGACTCCAGAGACGGTGGGCCGTCGCGGCGCCACGCGGCTGACGGCGCTGAGCCCGGCAGTACACTCGCCGCGCCGGAGCTCCGAGGACTCCGTCGATGATGGCTTCAGCATGAAGGACCTTAGGCACGAGTTGAAGGAGGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGGGCTACCAGCTCGAACTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCATTCGAGCGACTAAAGCGCGAACACGAGTCCGTAACGCGCGAGCTCAGCGCGGCGCGGGACGCTGTGCGTGCGCgggacgccgccgccgccggggcGGGCTTCGCCTTCGTGGACGCCGCCGCCCTAGAGCCCGCCGAGAGGGAGGCTGCTGGTGCTGGTGTAGGGGCTGTGCCAGCATTAGCGCTTGTGACGCAACAGGCGCATCAGCTGCTCAATGATGCCGGGGAGGGCACGCTTGACGTGCGGTTGCAAAAGCTGTTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGAGGAGCGCGCCGCCCGGCAGAACGGCGTCGCCAACCACCACGACCACGAGTACGAGAATGAACTAGAAACAGTCCGCAAGGCGGTGTCGGAGGCGAAggggcgcgcggcgcgggcggaGGCCGAGGCGGCGCTGCAGGCGGCGCATGTGGCGCGCCTGGAGGCGCAGCTGGCGCGTCTGCGAGCCCGGCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAACAGGAGAGGCGCAAGCTGCAGAGAGAGGCTCGGGAAGCTCTCAACCGGGTTGAGGAGTTGGAGACAGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCCAAGTCTGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDETKPAQMPINEAVKDDVQKGAATNGHSNGSVDEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALEPAEREAAGAGVGAVPALALVTQQAHQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDHEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -