Scos012599.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905475405.1
- Location
- FR997832.1:19947532-19968822[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-77 1.5e-72 245.8 19.9 1 271 120 389 120 407 0.90 2 2 0.94 4.3e+04 -5.3 15.9 1 49 408 455 408 482 0.73
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCTGAAGTAGCTACGCCACACAACAGCGATGACGAAAGTGGAGAAGCCTTTACAGATGGCGATTTTGGTGATTCTGAAGACGATATCTTAATTGAAGAGGGTGATTTGATTACTCATATTCCAATTAATGAGGCTAAGAACGAGGATATTGATACAATGAATGGAACTACCAATGGTCATTCTAATGACTCAAATGATCCAAACAGAATCAATGGTCGTAATGGTAGTGAAACACATTCGAGTGATACTGAGGGTCAAAGCTTAGTGTTTCCTGATTTACGTAGAGATTCTCACGGCGATCAGAGCCCTTCTATAGTTGGAATACTTGGCGGTCAACAGAATCATGCAGAGCAGAGGTTAGCAGCAAGACGCGCTGCGAGAGCTGAAGCGCGCGAGATACGTATGAGAGAGTTGGAGAGACAACAGCGAGAGCAGGAAGACCATGCTGATAAAGCATATGATATGTATGCCGAGACGGTGGGTCGTCGTGATCGCTCGCGGCTGGCGGGACTCAGTCCTGCAGGCCCCGTGCACTCACCGCGGCGTAGTTCTGAGGACTCCGCCGACGATACCTTTAGCATCAAGGACCTTAGGCACGAGTTAAAAGAGGTGGAGGAGAAGTTCCGTAAGGCGATGATACTGAACGCTCAGCTCGACAACGACAAGGCGGCGCTCGGCTATCAGCTCGAACTACTCAAGGATAGGATAGAAGAACTACACGAGGAATATGCACAATTACAGCGTGAACACAAAGAGAAATGTTCATCGTTCGAGCGTCTGAAGCGCGAGCACGAGTCGGTGTCTCGCGAGCTGGTGGCGGCGCGTGACGCGGTGCGCGCGCGCGACGTGTCGGCCGCGGCGGCGGGGTTCGCCTTCGTGGAGGCGGCGGCGCTGGGGGCCGGGGGGGCCGCGCCGGCCGGGGTGGGCGCCGCCGTCGGCTCCGTGCCGCCGCTGGCACTAGTCTCGCATACTGCTGAACAGCTGCTTAATGATGCTGGGGAAGGGACTCTCGATGTACGGTTGCAAAACCTGTTAAGTTCGAAACAATCATTGGAATCCGAAGTGCGCAAACTGAAGTTACAACTAAATGAAGAACGAGCGGCGAGACAAAACGGAGTAGCTAATCATCACGACCAGGAATATGAAAATGAATTGGAGACAGTGCGCAAGACGGCGGCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCACGCGGCGCACGTGGCGCGGCTGGAGGCGCAGCTGGCCAGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAGCACGAGCGCAGGAAACTGCAGCGCGAGGCACGGGAAGCATTGAACCGAGTGGAAGAACTGGAGACTGAAAACAGCCATCTAACTAAACGACTTGATAAACTTAAGAACGCCAAGTCTGCATTACTAAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPHNSDDESGEAFTDGDFGDSEDDILIEEGDLITHIPINEAKNEDIDTMNGTTNGHSNDSNDPNRINGRNGSETHSSDTEGQSLVFPDLRRDSHGDQSPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRDRSRLAGLSPAGPVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVSRELVAARDAVRARDVSAAAAGFAFVEAAALGAGGAAPAGVGAAVGSVPPLALVSHTAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKTAAEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -