Lpor008898.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_950005105.1
- Location
- OX465390.1:17713589-17723546[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.039 5.9e+02 0.3 0.1 45 91 55 102 34 107 0.79 2 3 3.4e-80 5.2e-76 256.6 22.8 1 297 122 411 122 414 0.91 3 3 2 3e+04 -7.3 15.3 1 49 410 457 410 485 0.56
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAAGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGAAGCCTTCACTGACGCTGATTTTGGTGATTCCGATGACGAAATGCTCGTCGAACGCCCTAATGAAGCGAAGCCTGCTCACATACCGATCAATGAAGCTGTAAATGATGATATTCAGAAAAATGCTCCTACTAATGGCCATACCAATGGTAGTGTGAATGAGCAGCCCAGAATGAATGGCCGAAAGAATAGTGAAGCTCATTCGAGTGATATGGATAACCAAAACTTAGTATTATCGGATTTGCGCCGAGATTCACACGGCGACCAGAATCCCTCTATCGTTGGCATTCTCGGCGATCAGCAGAACCATGCGGAGCAGAGATTAGCAGCGCGACGAGCGGCTCGGGCTGAAGCGAGGGAGATACGAATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGATATGTATGCGGGAAAGACACCAGAGACGGTAGGTCGCCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCTGCCGTGCACTCTCCCAGACGAAGCTCTGAAGACTCCATCGATGATGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTAGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTGAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAACACAGAGAAAAGTGCTCATCGTTCGAGCGTCTAAAGCGGGAACACGAGTCAGTGAGCCGCGAGCTCAGCGCGGCGCGAGACGCCGTGCGAGCGCgggacgccgccgccgccggcgccgGGTTCGCCTTCGTGGACGCCGCCGCGCTGGACGCGCCCGCCAGGGGCAGCGCCGGGGCCGCCGTCGGCGCCGTGCCCGCCTTGGCGCTGGTCACGCACCAGGCGCAGCAGCTGCTCGATGATGCGGGAGAGGGCACGCTTGACGTCCGGTTGCAAAACCTGCTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCCGGCAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAAACAGTCCGCAAGGCAGTGTCGGAAGCGAAGGGTCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGCAGCGCCTGCGCGCGCGGCAGGACCACGCCGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCTCGGGAAGCACTCAACCGGGTCGAGGAGTTAGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCGAAGTCGGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGEAFTDADFGDSDDEMLVERPNEAKPAHIPINEAVNDDIQKNAPTNGHTNGSVNEQPRMNGRKNSEAHSSDMDNQNLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAAGAGFAFVDAAALDAPARGSAGAAVGAVPALALVTHQAQQLLDDAGEGTLDVRLQNLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLQRLRARQDHADEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -