Tpit018081.1
Basic Information
- Insect
- Thaumetopoea pityocampa
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_017165845.1
- Location
- WUAW01020400.1:9752-28165[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-76 1.7e-71 241.7 21.4 1 280 126 405 126 418 0.88 2 2 0.39 1.1e+04 -4.0 11.6 119 170 429 480 423 492 0.68
Sequence Information
- Coding Sequence
- atgggACATCGAATCGAAATGGCTACACCTGACAATAGCGACGAGGAGAGCGGCGATGCTTTCACCGATGGAGATTTTGGGGATTCAGATGACGAGGCCATCGTGGAAGGTAGTGATGAAGCTAAATCCTCACATATTCCTGTCAACGAAACCATTAATAAAGGAGTTCACAAAACAAGTGTAGTAACTAACGGCCATTCTCCTAATTGTGATTTAgatgaaaaacaaaatgaacAGGGCAGATTAAATGCGCGCAAGAATATTGAGAATCAATTGAGTGACGTAGAAAACCTTGTGATATCGGATGCACGTAGAGACTCTCACGGCGAACAAAATCCTTCAATAGTTGGCATTCTTGGCGATCAACAGAACCATGCGGAGCAGCGTCTagcggcgcggcgcgctgcCAGGGCAGAGGCGCGCGAGATACGCATGCGTGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTATGCAGAGACGGTCGGTCGTCGCAGCGGCCCCCGGCTGGCGGCCCTCAGCCCGGCCGCCACGCTCTCGCCGCGCCGCAGCTCCGAGGACTCCGCCGACGACACCTTCAGCGTCAAGGAGCTCAGGCATGAGCTAAAAGAATTGGAGGAGAAGTTCCGAAAGGCCATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTATCAACTGGAACTCCTCAAGGACAGGATAGAGGAGCTCCACGAGGAGCACGTACAGCTGCAGCGCGAACACCGCGAGAAGTGCTCCGCGCACGAGCGCGTGCGCCGCGAGCACGAGTCGGTGTCCCGCGAGCTGGCGGCGGCCCGCGACGCGATCCGCGCGCGCGACTGCGCCGCGGACGCCGCGGGCTTCGCGTTCGTAGACGCGGCGACGCTGCCCGCGTCGGACACGTGCGCGGGCGCGCCCGCCGGGCCTGCCGTCGGCGCCGTGCCGCCGCTCGCGCTGGTCTCGCACTCCGCCGAGAAACTACTGCACGACGCCGGGGAAGGAACGCTAGACGTCCGATTGCAGAAGCTATTGAGCTCGAAACAGGCGCTGGAGTCCGAAGTGCGTAAGCTGAAGCTGCAGCTGAACGAGGAACGCGCCGCCCGGCAGAACGGCGTCGCGAGTCATCACGACGACGAGTACGAGAACGAACTGGAGAGCCTGCGCAAATCGCAGGCGGAGGCGAAGGctcgcgcggcgcgcgccgagGCGGAGGCCGCGCTGCAGGGCGCGCTGGTGGCGCGGCTGGAGGCACAGCTCGCGCGGCTCAAGGCGCGCCAGGACCATCAGGACGAGCACGAAGAGCAGCTCAAACAGGAGCGACGCAAGCTGCAGAGAGAGGCGCGAGAAGCTCTCAACAGAGTGGAAGAGCTGGAGACTGAAAACAGCCACTTGACGAAACGCCTCGACAAACTCAAGAACGCCAAATCTGCGCTCCTGAAGGACCTGTGA
- Protein Sequence
- MGHRIEMATPDNSDEESGDAFTDGDFGDSDDEAIVEGSDEAKSSHIPVNETINKGVHKTSVVTNGHSPNCDLDEKQNEQGRLNARKNIENQLSDVENLVISDARRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRSGPRLAALSPAATLSPRRSSEDSADDTFSVKELRHELKELEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHVQLQREHREKCSAHERVRREHESVSRELAAARDAIRARDCAADAAGFAFVDAATLPASDTCAGAPAGPAVGAVPPLALVSHSAEKLLHDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVASHHDDEYENELESLRKSQAEAKARAARAEAEAALQGALVARLEAQLARLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- -
- 80% Identity
- -