Hscr007249.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949316085.1
- Location
- OX438972.1:2845821-2869146[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.18 6.7e+03 -2.9 0.1 253 280 75 103 46 105 0.56 2 3 3.6e-78 1.4e-73 248.9 23.7 1 270 122 394 122 413 0.90 3 3 0.81 3.1e+04 -5.1 16.1 1 49 414 461 414 490 0.73
Sequence Information
- Coding Sequence
- ATGGGGCATCAATCTGAACGTGCTACACCTCACAATAGTGACGATGAAAGCGGAGATGCTTTTACAGATGGCGATTTTGGTGATTCAGATGATGAAAATGTTATAGAAAgaaatgataatataaaaacatcacATATTCCTATTAACGAAACCAAAAACGAAGATGTTCACAAAATGAACGGAGCAACAAATGGTTTTTCTAAGaacacagaagaacaacctagaCATATTGTTCGAACCATTAGTGAGGCTCACTCCAGTGATGTAGAAAATCAAAACTTACACCTATCAGACCTTCGCAGGGATTCCCACGGTGATCAAAGTCCTTCAATAGTTGGCATTCTTGGAGATCAGCAGAATCACGCTGAGCAGCGGTTGGCGGCGCGTCGCGCTGCCCGGGCAGAGGCGCGTGAAATCCGTATGCGCGAGTTAGAACGGCAGCAGAGGGAACAGGAAGACCATGCTGATAAAGCATATGACATGTATGCGGGCAAGACAGAGACGGTGGGGCGACGGGACCGCACACGCCTGGCGGCGCTCAGCCCCGCCAGCTCTGTGCACTCACCGCGGAGAAGCTCCGAGGACTCCGTCGACGATCTCTTCAGTATGAAAGATCTTAGGCACGAGTTGAAAGAAGTAGAAGAAAAATTCCGTAAGGCGATGATTCTGAACGCGCAATTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGTTGCTTAAGGACAGGATAGAGGAGCTCCACGAGGAATATGCACAGTTACAGCGGGAGCACAGGGAGAAGTGTTCGTCCCTGGAGCGCGTCAAGCGCGAGTTCGAGTCGGTGTCGCGCGAGCTGAGCGCGGCGCGTGACGCGATACGCGCGCGGGACTGCGCGGCCGCGGCGGCCGGCTTCGCGTTCGTGGAGGCCGCCGCGCTGGACGCCGCGCGGGACGCCGCGCCCGCCGGCGCCGGCCCGGCCGTCGGCGCCGTGCCGCCGCTCGCGCTCGTCAGCCACCACGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGGACGCTAGATGTACGGTTGCAGAATTTGTTAAGTTCTAAACAGTCACTGGAGTCGGAAGTTCGCAAGCTGAAGTTGCAGTTGAACGAGGAGCGTGCCGCCAGACAGAACGGTGTCGCGAATCATCACGACCAGGAGTATGAAAACGAGCTGGAGGCGGCGCGCAAGGGCCAGTCGGAGGCGAAGGgccgcgccgcgcgcgccgAGGCCGAGGCGGCGCTGCACGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCCCGTGAAGCATTAAACCGAGTGGAAGAACTGGAGACTGAGAACAGCCACCTGACGAAACGACTGGACAAACTCAAGAACGCAAAGTCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHQSERATPHNSDDESGDAFTDGDFGDSDDENVIERNDNIKTSHIPINETKNEDVHKMNGATNGFSKNTEEQPRHIVRTISEAHSSDVENQNLHLSDLRRDSHGDQSPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDLFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSLERVKREFESVSRELSAARDAIRARDCAAAAAGFAFVEAAALDAARDAAPAGAGPAVGAVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELEAARKGQSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907905;
- 90% Identity
- iTF_00157222;
- 80% Identity
- -